Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1443 95.1 1e-14 seq29 93.3 5e-14 >seq1443 Length=26160 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAG 109467 || || || ||||| || || || || || |||||| || || | |||||| |||| | Sbjct 12196 CGGAGGTAGTACATTCCAGTCTTCAGTCCCTTCTTCCACGCATAGAAATGCATGGAAGTG 12255 Query 109468 AGTTTGGAA-AGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAA 109526 | || | ||| | || || ||| | |||| ||||||| |||||| ||||| Sbjct 12256 ATCTTACCATAGT-TGGGTTCCTTCATGTGGAGATTCAACGACTGACTCTGATCTATGAA 12314 Query 109527 TCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTT 109586 || ||||||| || || | || || || || || ||| |||||||||||||| Sbjct 12315 AGGAGCACGATCTGCAGCTAGATCAATAATCGTTTTCTGTGGAATCTCCCAGACAGTCTT 12374 Query 109587 GTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCC 109637 |||||| ||| ||||| || |||||| | |||||| |||||||| || Sbjct 12375 GTACAACGCCTTAATATCGTCTGGAATGCCGTCGATGTGCTGAATAGAACC 12425 >seq29 Length=80917 Score = 93.3 bits (102), Expect = 5e-14 Identities = 147/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 11663 CCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGG 11722 |||||||||| ||||| |||||| || ||||||||||| | ||||| || |||| Sbjct 10318 CCGAACGCTTTCCACCGATAGCGTCGATTTCATCGATGAAGAGAATACAGGGCGCCTTGG 10259 Query 11723 CACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAA 11782 || || || | ||| | || || ||||| || | |||||||| || ||||| |||| Sbjct 10258 AGCGAGCTTGATTGAACATGTCGCGAACACGTTTTGGACCAACACCGACAAACATTTCAA 10199 Query 11783 CGAAGTTTGCGGCAGAACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGA 11841 ||| || | || | || || | ||| || || || | ||||| || | ||| | Sbjct 10198 GGAA-TTCGGAGCCTGAGACGGAGAGGAAAGGTACGTTGGCTTCACCGGCAGTAGCTTTA 10140 Query 11842 GCGAGGAGAGTCTTACCCGTACCAGGTG 11869 || || |||||||| || ||||| |||| Sbjct 10139 GCTAGAAGAGTCTTCCCTGTACCTGGTG 10112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588856644013600