Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1443 138 1e-27 seq2 95.1 1e-14 >seq1443 Length=26160 Score = 138 bits (152), Expect = 1e-27 Identities = 420/646 (65%), Gaps = 5/646 (1%) Strand=Plus/Plus Query 106676 CGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAG 106735 || ||||| ||| ||||| | ||||| ||||| |||||||| ||| ||| | Sbjct 13533 CGACCCTCTTTCTCATACTTCGAATAGAGCGCTTCGAACTCCTCTCCCCAACAGTCTGCC 13592 Query 106736 AGACCTGGTGCCTT-GTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTT 106794 ||||| || || || || ||| | | || ||| || | || | ||||| || Sbjct 13593 AGACCGGG-GCATTCGTGAGGATCCATGAAAGTCCACATCTCATCATCATGAACCCTCTG 13651 Query 106795 CATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTC 106854 ||||||||| || |||||||| || | |||||||||||| ||| ||| ||| | Sbjct 13652 CATGAAAAGATCAGGAATCCAGAGAGCCAGGAAGAGATCTCTAGCACGAATCTCCTCGGC 13711 Query 106855 ACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATA 106914 || ||| || | ||| | ||||| || || ||| | ||||| || || ||||| Sbjct 13712 CCCAGTGTTTCTACGCAGCTCTATGAACTGCAAGACATCAGGATGCCAGGGTTCTAGATA 13771 Query 106915 GACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTT 106971 | || | || || || | |||| |||| | ||||| | || ||| || Sbjct 13772 TATAGCAAAAGCACCGGGACGCTTATTCCCACCTTGGTCCACATACCTAGCGGTGCTATT 13831 Query 106972 AAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGA 107031 | || || ||||| |||| | |||| |||| |||||| || || ||| || Sbjct 13832 GTACACTCGCAGCATGGGAACCAAGCCATTGGATTCACCATTGGTTCCGGCGATAAAAGT 13891 Query 107032 TTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTG 107091 ||| | | | ||| | | | |||| || ||||| ||||||||| Sbjct 13892 GCCCTTGCTACGAATACAATGCACATTAAGACCAACGCCTCCAGCGTTCTTTGAGATCAA 13951 Query 107092 CGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAG 107151 ||||| | | | || || | |||||||| | ||| ||| ||||| | | || ||| Sbjct 13952 GGCACATTGCTTGAGTGTATCGTAGATACCCTCGATACTGTCGTCCTTCATCGTGAGAAG 14011 Query 107152 GAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTG 107211 ||| || || |||||||| || |||||| || | ||||||||| || || | || || Sbjct 14012 GAAACAGCTCGACATCTGAGGAACTGGTGTGCCCGAATTGAAGAGAGTCGGAGAGGCCTG 14071 Query 107212 AATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCC 107271 | ||||| ||| ||||| || || ||||| ||| ||| || | || | || Sbjct 14072 AGTGAACCACTTTTGAGACATTAGGTGATACGTCTCAAAGGCAGCTTCGAGATCATATCC 14131 Query 107272 GTGGATGCCGATGGCCACACGCATAAACATGTATTGGGGTGTTTCC 107317 ||||||||| | || ||| ||||||||||| | || ||| | ||| Sbjct 14132 GTGGATGCCCAAGGACACGCGCATAAACATATGCTGCGGTCTCTCC 14177 >seq2 Length=118199 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| |||||||| || ||| ||| | || || |||| || || ||||| || || Sbjct 63197 GTGCAGACCCTCGTCACGGCTAATCAACTCGTTACTGAAGGTGAGACCCGGCATTAGGCC 63256 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||||||||| | || | | |||||| || |||||||| | |||||||| Sbjct 63257 ACGCTTCTTCAACCAGAAGATCGAGGCGAATGAACCCGAGAAGAAAACCCCCTCCACTGC 63316 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTG-TGTCAAACCATTTCATTG 117463 |||||||| | || ||||| || | | || | ||||| | | | ||| ||| || Sbjct 63317 AGCAAACGCCATAACACGCTCCGCATACG-TCGCGTCTTTGTTCGCGATCCACCTCAGTG 63375 Query 117464 CCCATTTCGCCTTCTTCTCAATACATGGTACAGT 117497 |||| | ||||||||||| | |||||| | ||| Sbjct 63376 CCCAATCCGCCTTCTTCTTCACACATGGCAGAGT 63409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589861240390880