Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq14526 147 5e-30 seq4364 147 5e-30 seq1635 131 4e-25 seq1486 123 6e-23 seq2850 86.0 1e-11 >seq14526 Length=1284 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | |||||||||||| | |||||||| ||||| || ||||| || | |||||| | Sbjct 717 GAGACGCAAAACAAGGTGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTGCG 776 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| | ||||| || || || || |||| |||||||||||| || || || || Sbjct 777 TCCATCTTCCAATTGCTTGCCGGCAAAAATCAGTCTTTGTTGGTCTGGTGGGATTCCCTC 836 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || |||||||| || || || |||||||| || || | |||||||||||| || Sbjct 837 CTTATCTTGAATCTTGGCTTTTACATTCTCAATCGTATCACTAGGTTCCACTTCAAGTGT 896 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || || | ||| |||||||| | ||||| Sbjct 897 TATAGTCTTCCCAGTAAGAGTCTTTACGAAAATCTGCAT 935 Score = 138 bits (152), Expect = 3e-27 Identities = 167/226 (74%), Gaps = 6/226 (3%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| |||| | ||| | |||||| || ||||||||||| ||||||||||| | | ||| Sbjct 942 TCTAAGTCGTAGAACCAAGTGAAGCGTAGACTCTTTTTGTATATTGTAATCAGACAAAGT 1001 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||| || | || ||||| ||||| ||||| ||||| || ||||||||||| || Sbjct 1002 GCGGCCATCCTCTAATTGTTTACCGGCGAATATAAGACGTTGCTGATCTGGAGGAATTCC 1061 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 ||| || ||||||||||| || || || ||||| | || ||| ||| ||||| Sbjct 1062 TTCCTTATCTTGAATTTTCGCTTTTACATTTTCAATTGAATC---ACTGGGTTCAACTTC 1118 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 |||||||| || || || || | || || ||||| | |||||| Sbjct 1119 AAGGGTAATAGTTTTACCAGTTAGGGTCTTGACGAAGATCTGCATT 1164 Score = 105 bits (116), Expect = 1e-17 Identities = 152/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || ||||| || || || || |||||||| || |||||| | || ||||| Sbjct 499 ACTAGATGGAGAGTTGATTCCTTCTGGATATTGTAGTCATTAAGAGTACGTCCGTCTTCC 558 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||| || ||||||||||| ||||| || ||||| || ||||| ||| Sbjct 559 AGCTGCTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTTGTCCTGA 618 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || || || ||||| || | ||| ||| || || || || |||| || Sbjct 619 ATCTTCGCTTTCACATTCTCTATCGAGTC---ACTCGGCTCAACCTCGAGAGTAATTGTT 675 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || || | || || || || | ||||||| Sbjct 676 TTACCGGTGAGGGTCTTCACAAAAATTTGCATT 708 >seq4364 Length=12272 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | |||||||||||| | |||||||| ||||| || ||||| || | |||||| | Sbjct 3918 GAGACGCAAAACAAGGTGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTGCG 3977 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| | ||||| || || || || |||| |||||||||||| || || || || Sbjct 3978 TCCATCTTCCAATTGCTTGCCGGCAAAAATCAGTCTTTGTTGGTCTGGTGGGATTCCCTC 4037 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || |||||||| || || || |||||||| || || | ||||||||| || || Sbjct 4038 CTTATCTTGAATCTTGGCTTTTACATTCTCAATTGTATCACTAGGTTCCACTTCGAGCGT 4097 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || || | |||||||||||| | ||||| Sbjct 4098 TATAGTCTTCCCAGTAAGAGTTTTTACGAAAATCTGCAT 4136 Score = 145 bits (160), Expect = 2e-29 Identities = 160/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || ||||| || ||||| |||||||| || | || || | |||||||| Sbjct 7036 ACAAGATGTAGGGTGGATTCCTTTTGGATATTGTAGTCCGAGAGGGTACGACCATCTTCA 6977 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || |||||||| || ||||||||||| ||||||||||| ||||||||| Sbjct 6976 AGCTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGA 6917 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || ||||| ||||| || ||| || |||||||| |||| || Sbjct 6916 ATCTTAGCCTTAACATTCTCTATGGTATC---ACTGGGCTCGACTTCAAGTGTAATGGTT 6860 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || | ||| || || || | ||||| Sbjct 6859 TTACCAGTGAGAGTCTTCACAAAAATCTGCAT 6828 Score = 138 bits (152), Expect = 3e-27 Identities = 167/226 (74%), Gaps = 6/226 (3%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| |||| | ||| | |||||| || ||||||||||| ||||||||||| | | ||| Sbjct 3459 TCTAAGTCGTAGAACCAAGTGAAGCGTAGACTCTTTTTGTATATTGTAATCAGACAAAGT 3518 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||| || | || ||||| ||||| ||||| ||||| || ||||||||||| || Sbjct 3519 GCGGCCATCCTCTAATTGTTTACCGGCGAATATAAGACGTTGCTGATCTGGAGGAATTCC 3578 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 ||| || ||||||||||| || || || ||||| | || ||| ||| ||||| Sbjct 3579 TTCCTTATCTTGAATTTTCGCTTTTACATTTTCAATTGAATC---ACTGGGTTCAACTTC 3635 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 |||||||| || || || || | || || ||||| | |||||| Sbjct 3636 AAGGGTAATAGTTTTACCAGTTAGGGTCTTGACGAAGATCTGCATT 3681 Score = 102 bits (112), Expect = 2e-16 Identities = 151/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || ||||| || || || || |||||||| || | ||||| | || ||||| Sbjct 3700 ACTAGATGTAGAGTAGATTCCTTCTGGATATTGTAGTCAGATAGAGTACGTCCGTCTTCC 3759 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| || ||||| || ||||||||||| ||||| || ||||| || ||||| ||| Sbjct 3760 AACTGCTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTTGTCCTGA 3819 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || || || ||||| || | ||| ||| || || || || |||| || Sbjct 3820 ATCTTCGCTTTCACATTCTCTATCGAGTC---ACTCGGCTCAACCTCGAGAGTAATTGTT 3876 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || || | || || || || | ||||||| Sbjct 3877 TTACCGGTGAGGGTCTTCACAAAAATTTGCATT 3909 Score = 100 bits (110), Expect = 6e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || ||||| || || || || |||||||| || |||||| | || ||||| Sbjct 3317 ACTAGATGGAGAGTTGATTCCTTCTGGATATTGTAGTCATTAAGAGTACGTCCGTCTTCC 3376 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||| || ||||||||||| ||||| || ||||| || ||||| ||| Sbjct 3377 AGCTGCTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTTGTCCTGA 3436 Query 195052 ATTTT 195056 || || Sbjct 3437 ATCTT 3441 >seq1635 Length=24574 Score = 131 bits (144), Expect = 4e-25 Identities = 157/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || ||||| || || || || |||||||| || | |||||| | ||| ||||| Sbjct 15483 ACAAGATGGAGAGTTGATTCCTTCTGGATATTGTAGTCAGAAAGAGTGCGCCCCTCTTCC 15424 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || ||||| || ||||||||||| ||||| || ||||| || ||||| ||| Sbjct 15423 AGCTGTTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTTGTCCTGA 15364 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || |||||||| ||||| ||| || || || || |||| || Sbjct 15363 ATCTTCGCCTTCACATTCTCAATCGTGTC---ACTCGGCTCAACCTCGAGAGTAATTGTT 15307 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| || | || || || || | |||||| Sbjct 15306 TTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 15275 Score = 125 bits (138), Expect = 2e-23 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || ||||| || || || || |||||||| || | ||||| | || ||||| Sbjct 5580 ACAAGATGGAGAGTAGATTCCTTCTGGATATTGTAGTCAGATAGAGTACGTCCGTCTTCC 5639 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| ||||| || ||||||||||| ||||| || ||||| || ||||| ||| Sbjct 5640 AGCTGCTTACCAGCGAAAATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTTGTCCTGA 5699 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 || || ||| || |||||||| ||||| Sbjct 5700 ATCTTCGCCTTCACATTCTCAATCGTGTC 5728 Score = 96.9 bits (106), Expect = 8e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || ||||| || || || || |||||||| || |||||| | || ||||| Sbjct 16504 ACTAGATGTAGAGTTGATTCCTTCTGGATATTGTAGTCATTAAGAGTACGTCCGTCTTCC 16445 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||| || ||||||||||| ||||| || ||||| || ||||| ||| Sbjct 16444 AGCTGCTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTTGTCCTGA 16385 Query 195052 A 195052 | Sbjct 16384 A 16384 >seq1486 Length=25894 Score = 123 bits (136), Expect = 6e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| || || || || || || ||||| || | ||||| | |||||||| ||||| Sbjct 18487 TGAAGGGTAGATTCCTTCTGGATGTTGTAGTCCGATAGAGTACGGCCATCTTCTAGCTGT 18428 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || ||||| | |||||||| ||||||||||| ||||| || || |||||||| Sbjct 18427 TTGCCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTATCCTGAATTTTG 18368 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| || || || |||| || ||| ||| |||||||| || | || || || || Sbjct 18367 GCCTTCACATTTTCGATGGAATCTGAAGGTTCAACTTCAAGAGTGATAGTTTTGCCAGTT 18308 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 ||||| || || || | ||||| Sbjct 18307 AAAGTCTTAACAAAGATCTGCAT 18285 >seq2850 Length=17461 Score = 86.0 bits (94), Expect = 1e-11 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 194934 AAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAG 194993 ||| ||||||||||| || || |||| |||||| || | || || | |||||| || Sbjct 11931 AAGATGAAGAGTGGATTCCTTCTGAACATTGTATTCAGAAATGGTATGCTCATCTTGCAG 11990 Query 194994 CTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAAT 195053 | ||||| || || | ||||||||||| | ||| || ||||| || || | ||||| Sbjct 11991 CACTTTACCAGCAAAAACGAGTCGTTGTTGATGTGGGGGGATGCCCTCCTTAGCCTGAAT 12050 Query 195054 TTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCC 195113 || | ||| |||||| || || ||| || || |||| || | || ||||| Sbjct 12051 CTTCTCCTTCACGTTCAATATCGTATCCTTTGGCTCAACCTCAATTGTTATTGTTTTTCC 12110 Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140 | | | ||||||| || | |||||| Sbjct 12111 ATTTAGATTTTTTACAAAAATTTGCAT 12137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109251142642604