Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1635 122 6e-23 seq14526 116 2e-21 seq4364 116 2e-21 seq1486 91.5 1e-13 seq5571 84.2 1e-11 >seq1635 Length=24574 Score = 122 bits (134), Expect = 6e-23 Identities = 145/195 (74%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| || || ||||| ||||| | || | || ||||||||||| || || || Sbjct 15466 TTCCTTCTGGATATTGTAGTCAGAAAGAGTGCGCCCCTCTTCCAGCTGTTTGCCAGCGAA 15407 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || |||||||| || ||| | || | ||||||||||| ||||||| || || | Sbjct 15406 AATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTCAC--A 15349 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || |||| |||| | |||||| |||| || || |||||||| ||||| |||||| Sbjct 15348 TTCTCAATCGTGTCACTCGGCTCAACCTCGAGAGTAATTGTTTTTCCAGTGAGGGTCTTC 15289 Query 34968 ACAAAGATCTGCATA 34982 ||||| || |||||| Sbjct 15288 ACAAAAATTTGCATA 15274 Score = 116 bits (128), Expect = 2e-21 Identities = 144/195 (74%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| || || ||||| || || | ||| | || |||||||| || || || || Sbjct 5597 TTCCTTCTGGATATTGTAGTCAGATAGAGTACGTCCGTCTTCCAGCTGCTTACCAGCGAA 5656 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || |||||||| || ||| | || | ||||||||||| ||||||| || || | Sbjct 5657 AATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTCAC--A 5714 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || |||| |||| | |||||| |||| ||||| ||||| || ||||| |||||| Sbjct 5715 TTCTCAATCGTGTCACTCGGCTCAACCTCGAGAGTTATTGTTTTACCGGTGAGGGTCTTC 5774 Query 34968 ACAAAGATCTGCATA 34982 ||||| || |||||| Sbjct 5775 ACAAAAATTTGCATA 5789 >seq14526 Length=1284 Score = 116 bits (128), Expect = 2e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| || || ||||| ||| | ||| | || |||||||| || || || || Sbjct 516 TTCCTTCTGGATATTGTAGTCATTAAGAGTACGTCCGTCTTCCAGCTGCTTGCCAGCGAA 575 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || |||||||| || ||| | || | ||||||||||| ||||||| ||| || Sbjct 576 AATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTTGTCCTGAATCTTCGCTTTCACATT 635 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 ||||||| |||| | |||||| |||| || || ||||| || ||||| |||||||| Sbjct 636 CTCTATCGAGTCACTCGGCTCAACCTCGAGAGTAATTGTTTTACCGGTGAGGGTCTTCAC 695 Query 34970 AAAGATCTGCAT 34981 ||| || ||||| Sbjct 696 AAAAATTTGCAT 707 Score = 95.1 bits (104), Expect = 8e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| || ||||| || || || || || || | | || |||| || Sbjct 954 AACCAAGTGAAGCGTAGACTCTTTTTGTATATTGTAATCAGACAAAGTGCGGCCATCCTC 1013 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 | ||||| ||||| ||||| || |||||||| ||| | || | || ||||| || Sbjct 1014 TAATTGTTTACCGGCGAATATAAGACGTTGCTGATCTGGAGGAATTCCTTCCTTATCTTG 1073 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||| ||| ||| || | | || || |||| || ||||| || | ||| || ||||| Sbjct 1074 AATTTTCGCTTTTACATTTTCAATTGAATCACTGGGTTCAACTTCAAGGGTAATAGTTTT 1133 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || ||||| || ||||||||||| Sbjct 1134 ACCAGTTAGGGTCTTGACGAAGATCTGCAT 1163 >seq4364 Length=12272 Score = 116 bits (128), Expect = 2e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| || || ||||| || || | ||| | || |||| ||| || || || || Sbjct 3717 TTCCTTCTGGATATTGTAGTCAGATAGAGTACGTCCGTCTTCCAACTGCTTGCCAGCGAA 3776 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || |||||||| || ||| | || | ||||||||||| ||||||| ||| || Sbjct 3777 AATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTTGTCCTGAATCTTCGCTTTCACATT 3836 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 ||||||| |||| | |||||| |||| || || ||||| || ||||| |||||||| Sbjct 3837 CTCTATCGAGTCACTCGGCTCAACCTCGAGAGTAATTGTTTTACCGGTGAGGGTCTTCAC 3896 Query 34970 AAAGATCTGCAT 34981 ||| || ||||| Sbjct 3897 AAAAATTTGCAT 3908 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| || || || || |||||||| ||| | || |||| || ||||| || || ||||| Sbjct 7019 TTCCTTTTGGATATTGTAGTCCGAGAGGGTACGACCATCTTCAAGCTGCTTGCCAGCAAA 6960 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || || |||||| | || | || |||||||| |||||| || || Sbjct 6959 GATAAGACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGAATCTTAGCCTTAACATT 6900 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 |||| | |||| || ||| || || | || |||||||| || |||||||||||||| Sbjct 6899 CTCTATGGTATCACTGGGCTCGACTTCAAGTGTAATGGTTTTACCAGTGAGAGTCTTCAC 6840 Query 34970 AAAGATCTGCAT 34981 ||| |||||||| Sbjct 6839 AAAAATCTGCAT 6828 Score = 95.1 bits (104), Expect = 8e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| || ||||| || || || || || || | | || |||| || Sbjct 3471 AACCAAGTGAAGCGTAGACTCTTTTTGTATATTGTAATCAGACAAAGTGCGGCCATCCTC 3530 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 | ||||| ||||| ||||| || |||||||| ||| | || | || ||||| || Sbjct 3531 TAATTGTTTACCGGCGAATATAAGACGTTGCTGATCTGGAGGAATTCCTTCCTTATCTTG 3590 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||| ||| ||| || | | || || |||| || ||||| || | ||| || ||||| Sbjct 3591 AATTTTCGCTTTTACATTTTCAATTGAATCACTGGGTTCAACTTCAAGGGTAATAGTTTT 3650 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || ||||| || ||||||||||| Sbjct 3651 ACCAGTTAGGGTCTTGACGAAGATCTGCAT 3680 >seq1486 Length=25894 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 34770 AAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCA 34829 || ||||| |||| || ||| ||||| ||||| |||||||| || | || |||| Sbjct 18496 AACACCAAATGAAGGGTAGATTCCTTCTGGATGTTGTAGTCCGATAGAGTACGGCCATCT 18437 Query 34830 TCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34889 || |||||||| || ||||| || | ||||| || ||| | || | || ||||| || Sbjct 18436 TCTAGCTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTATCC 18377 Query 34890 CTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 ||| || || || | | || || || | ||||| || | || || ||| Sbjct 18376 TGAATTTTGGCCTTCACATTTTCGATGGAATCTGAAGGTTCAACTTCAAGAGTGATAGTT 18317 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || || || | |||||| ||||||||||||||||| Sbjct 18316 TTGCCAGTTAAAGTCTTAACAAAGATCTGCATATT 18282 >seq5571 Length=9446 Score = 84.2 bits (92), Expect = 1e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 ||| | || || || || | || | | || |||| ||||||||||| || ||||| | Sbjct 7226 TTCAGGATATTGTATTCAGTAATGGTATGTCCATCTTCCAGCTGTTTACCAGCAAAAACG 7285 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913 |||||||| || | | | | | |||||||| | ||||||| || ||| || Sbjct 7286 AGTCGTTGATGTTGTGGAGAGATGCCCTCCTTAGCCTGAATCTTCGCCTTCACGTTCTCT 7345 Query 34914 ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAG 34973 |||| |||| | |||||| || | || || ||||| || | ||| ||||||||||| Sbjct 7346 ATCGTGTCACTTGGCTCAACGTCAAGTGTAATTGTTTTACCGGAGAGGGTCTTCACAAAA 7405 Query 34974 ATCTGCATA 34982 || |||||| Sbjct 7406 ATTTGCATA 7414 Score = 84.2 bits (92), Expect = 1e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34822 GTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCT 34881 || |||| ||||||||||| || ||||| | |||||||| || | | | | | |||| Sbjct 7861 GTCCATCTTCCAGCTGTTTACCAGCAAAAACGAGTCGTTGATGTTGTGGAGAGATGCCCT 7920 Query 34882 CCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGG 34941 |||| | ||||||| || ||| |||||| |||| | |||||| || | | Sbjct 7921 CCTTAGCCTGAATCTTCGCCTTCACGTTCTCTATCGTGTCACTTGGCTCAACGTCAAGTG 7980 Query 34942 TTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || ||||| || | ||| ||||||||||| || |||||| Sbjct 7981 TAATTGTTTTACCGGAGAGGGTCTTCACAAAAATTTGCATA 8021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324569457675936