Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2 179 4e-40 seq1443 123 3e-23 >seq2 Length=118199 Score = 179 bits (198), Expect = 4e-40 Identities = 404/606 (67%), Gaps = 6/606 (1%) Strand=Plus/Plus Query 18946 TGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCA 19005 || || || |||| ||| || ||||| || || |||||||| | || ||||| || Sbjct 63168 TGCTTGAAAATCAGACAGGCGAAATCTGTGTGCAGACCCTCGTCACGGCTAATCAACTCG 63227 Query 19006 TTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAAT 19065 ||| || || | ||| ||||| || || | || || |||||||| || || || ||| Sbjct 63228 TTACTGAAGGTGAGACCCGGCATTAGGCCACGCTTCTTCAACCAGAAGATCGAGGCGAAT 63287 Query 19066 GATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTA 19125 || || || ||||| | || || ||||| ||||| || | | | || |||| | Sbjct 63288 GAACCCGAGAAGAAAACCCCCTCCACTGCAGCAAACGCCATAACACGCTCCGCATACGTC 63347 Query 19126 GCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATT 19185 || || || || ||||| ||||||||||||| |||||||| || |||||||||| Sbjct 63348 GCGTCTTTGTTCGCGATCCACCTCAGTGCCCAATCCGCCTTCTTCTTCACACATGGCAGA 63407 Query 19186 GTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTAT- 19244 ||||| || | ||| || ||| | ||||| | | ||||| || || | ||| || Sbjct 63408 GTCTCAATCGCATTGAAGAGAAAATCACGCTTGGCCGGCTCTTTCACGTAGGTATCGATG 63467 Query 19245 --CAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAA 19302 || | || ||||| || || || || || |||| || || || | || || ||| Sbjct 63468 AGCAGTGAA---TACATCTCCGAGTGGATGTTCTCTACTGCAATTTGCATCCCATAGAAA 63524 Query 19303 CATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACT 19362 || | ||||| | || || || || || || | | |||||| || || || Sbjct 63525 CAACGAGCTTCCGGAATTTGAACCTCTTGGCAGAAGTTCATGCACAAATTCTCGTTCACA 63584 Query 19363 ATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAG 19422 ||||| ||||| ||||| || || || | || || ||||| || ||| | Sbjct 63585 ATTCCGTCACTGGCTGCGAAGAAAGCCAGCACGTGGGAGATAAAGTGACGCTCACCATCA 63644 Query 19423 GTTAATGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAA 19482 | | | | | ||| ||| | | |||||| | || || || || || || ||||| || Sbjct 63645 TTCAGTCTCTCCCAGTCAGTGAGATCTTTCGTCAAGTCAACCTCCTCCACGGTCCAGAAG 63704 Query 19483 GAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACA 19542 |||||| |||| || || || | | ||||||||| | ||||| || || | | |||| Sbjct 63705 GAAGCCACTGCCTTCTTGTAGAACTCCCATATATCGTGGTATTGGATGGGCATCACAACA 63764 Query 19543 AATCTA 19548 || ||| Sbjct 63765 AACCTA 63770 >seq1443 Length=26160 Score = 123 bits (136), Expect = 3e-23 Identities = 403/623 (65%), Gaps = 6/623 (1%) Strand=Plus/Plus Query 48156 CCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATA 48215 || || ||||| | |||| ||| || | ||| |||||||| | || || ||| Sbjct 13596 CCGGGGCATTCGTGAGGATCCATGAAAGTCCACATCTCATCATCATGAACCCTCTGCATG 13655 Query 48216 AATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCA 48275 || | ||| || ||||| ||||| | || | ||| |||| | | || || ||| Sbjct 13656 AAAAGATCAGGAATCCAGAGAGCCAGGAAGAGATCTCTAGCACGAATCTCCTCGGCCCCA 13715 Query 48276 CTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATT 48335 | || || || || | || | || | ||||| |||||| ||||||| |||||| Sbjct 13716 GTGTTTCTACGCAGCTCTATGAACTGCAAGACATCAGGATGCCAGGGTTCTAGATATATA 13775 Query 48336 GCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAA 48395 || | |||| || || ||||| || ||||| || | ||| || || || | || || Sbjct 13776 GCAAAAGCACCGGGACGCTTATTCCCACCTTGGTCCACATACCTAGCGGTGCTATTGTAC 13835 Query 48396 ACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCA 48455 |||| | ||| || || | ||||| ||| |||||||||||| | ||| || | || Sbjct 13836 ACTCGCAGCATGGGAACCAAGCCATTGGATTCACCATTGGTTCCGGCGATAAAAGTGCC- 13894 Query 48456 CTAGCT---CTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGA 48512 || ||| || | | | ||| || ||| | || || || | || || || | Sbjct 13895 CTTGCTACGAATACAATGCACATT--AAGACCAACGCCTCCAGCGTTCTTTGAGATCAAG 13952 Query 48513 GCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGA 48572 ||||| | || || ||||| || || || || ||||| || || |||| | | || Sbjct 13953 GCACATTGCTTGAGTGTATCGTAGATACCCTCGATACTGTCGTCCTTCATCGTGAGAAGG 14012 Query 48573 AAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGA 48632 ||||| || ||||| || ||| || || ||||| || | || ||||| || ||| Sbjct 14013 AAACAGCTCGACATCTGAGGAACTGGTGTGCCCGAATTGAAGAGAGTCGGAGAGGCCTGA 14072 Query 48633 ATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGA 48692 | ||||| || | || | | | ||| || |||| ||| || | ||| || Sbjct 14073 GTGAACCACTTTTGAGACATTAGGTGATACGTCTCAAAGGCAGCTTCGAGATCATATCCG 14132 Query 48693 TGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTT 48752 || || || | || || ||||| ||||||| || ||||| || | | ||| || | Sbjct 14133 TGGATGCCCAAGGACACGCGCATAAACATATGCTGCGGTCTCTCCCAAGTCTTGCCATCT 14192 Query 48753 ATTTTCAAAAGATATGATTTTTC 48775 | || | |||||| || || || Sbjct 14193 CTCTTTAGAAGATAAGACTTCTC 14215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561994888651680