Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq1486 170 2e-37 seq14526 161 8e-35 seq4364 161 8e-35 >seq1486 Length=25894 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 |||||| || ||||||||||||||||| || || || ||||| || | | ||| | | | Sbjct 18500 ACGTAACACCAAATGAAGGGTAGATTCCTTCTGGATGTTGTAGTCCGATAGAGTACGGCC 18441 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| || | || || || ||||| |||||||| |||||||| || ||||| ||||| || Sbjct 18440 ATCTTCTAGCTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCCTT 18381 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||| |||||||| || ||| |||| | | || || | ||| ||||||||||||| Sbjct 18380 ATCCTGAATTTTGGCCTTCACATTTTCGATGGAATCTGAAGGTTCAACTTCAAGAGTGAT 18321 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAA 101480 |||||||| |||||||| || ||||| |||||||| | ||| ||| Sbjct 18320 AGTTTTGCCAGTTAAAGTCTTAACAAAGATCTGCATATTAACGTGAA 18274 >seq14526 Length=1284 Score = 161 bits (178), Expect = 8e-35 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| | |||| ||| || ||||| ||||| |||||||||||||||||||| | Sbjct 937 CCACCTCTAAGTCGTAGAACCAAGTGAAGCGTAGACTCTTTTTGTATATTGTAATCAGAC 996 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | | |||| || ||||| ||||| || ||||| | ||| || ||||| || ||| Sbjct 997 AAAGTGCGGCCATCCTCTAATTGTTTACCGGCGAATATAAGACGTTGCTGATCTGGAGGA 1056 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| |||||||||||||| ||||||| |||| | | ||| | ||| ||| Sbjct 1057 ATTCCTTCCTTATCTTGAATTTTCGCTTTTACATTTTCAATTGAATCACTGGGTTCAACT 1116 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || | ||||| || |||| || || || || |||||||| Sbjct 1117 TCAAGGGTAATAGTTTTACCAGTTAGGGTCTTGACGAAGATCTGCAT 1163 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| || | | ||| ||||| | || | ||| || || ||||| || ||||| || | Sbjct 707 TTCCACCACGGAGACGCAAAACAAGGTGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAG 766 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||| | |||| ||||||||||| || ||||| |||| | ||||| || || | Sbjct 767 AAAGAGTGCGTCCATCTTCCAATTGCTTGCCGGCAAAAATCAGTCTTTGTTGGTCTGGTG 826 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || || || ||||||||||| || ||||||| | || | || ||| | ||||| Sbjct 827 GGATTCCCTCCTTATCTTGAATCTTGGCTTTTACATTCTCAATCGTATCACTAGGTTCCA 886 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||||| || | || || || || | ||| ||||| || |||||||| Sbjct 887 CTTCAAGTGTTATAGTCTTCCCAGTAAGAGTCTTTACGAAAATCTGCAT 935 >seq4364 Length=12272 Score = 161 bits (178), Expect = 8e-35 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||| ||||| | |||| ||| || ||||| ||||| |||||||||||||||||||| | Sbjct 3452 TTCTNCCTCTAAGTCGTAGAACCAAGTGAAGCGTAGACTCTTTTTGTATATTGTAATCAG 3511 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||| | | |||| || ||||| ||||| || ||||| | ||| || ||||| || | Sbjct 3512 ACAAAGTGCGGCCATCCTCTAATTGTTTACCGGCGAATATAAGACGTTGCTGATCTGGAG 3571 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| ||||| |||||||||||||| ||||||| |||| | | ||| | ||| | Sbjct 3572 GAATTCCTTCCTTATCTTGAATTTTCGCTTTTACATTTTCAATTGAATCACTGGGTTCAA 3631 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||||| || | ||||| || |||| || || || || |||||||| Sbjct 3632 CTTCAAGGGTAATAGTTTTACCAGTTAGGGTCTTGACGAAGATCTGCAT 3680 Score = 122 bits (134), Expect = 7e-23 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| ||||| ||||| ||||| |||||||| || | || || | |||| || | || Sbjct 7031 ATGTAGGGTGGATTCCTTTTGGATATTGTAGTCCGAGAGGGTACGACCATCTTCAAGCTG 6972 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || ||||| || | ||||||||| || || ||||||||||| || |||||||| || Sbjct 6971 CTTGCCAGCAAAGATAAGACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGAATCTT 6912 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| | |||| || ||| | || |||||||| || | ||||| || || Sbjct 6911 AGCCTTAACATTCTCTATGGTATCACTGGGCTCGACTTCAAGTGTAATGGTTTTACCAGT 6852 Query 101446 TAAAGTTTTTACAAATATCTGCATGGT 101472 | ||| || ||||| |||||||| || Sbjct 6851 GAGAGTCTTCACAAAAATCTGCATCGT 6825 Score = 120 bits (132), Expect = 2e-22 Identities = 167/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| || | | ||| ||||| | || | ||| || || ||||| || ||||| || | Sbjct 3908 TTCCACCACGGAGACGCAAAACAAGGTGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAG 3967 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||| | |||| ||||||||||| || ||||| |||| | ||||| || || | Sbjct 3968 AAAGAGTGCGTCCATCTTCCAATTGCTTGCCGGCAAAAATCAGTCTTTGTTGGTCTGGTG 4027 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || || || ||||||||||| || ||||||| | || | || ||| | ||||| Sbjct 4028 GGATTCCCTCCTTATCTTGAATCTTGGCTTTTACATTCTCAATTGTATCACTAGGTTCCA 4087 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTA 101474 |||| || || | || || || || | ||||||||| || ||||||||| ||| Sbjct 4088 CTTCGAGCGTTATAGTCTTCCCAGTAAGAGTTTTTACGAAAATCTGCATGTTTA 4141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396200101827684