Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq4364 118 8e-22 seq1635 102 6e-17 seq14526 96.9 3e-15 seq1486 82.4 6e-11 >seq4364 Length=12272 Score = 118 bits (130), Expect = 8e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||| | |||||| || || || || |||||||| ||||||||| | || Sbjct 3691 AGTCGAAGCACTAGATGTAGAGTAGATTCCTTCTGGATATTGTAGTCAGATAGAGTACGT 3750 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| ||||||||||| || || || || ||||| |||||||| | ||| | ||||||| Sbjct 3751 CCGTCTTCCAACTGCTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGGGGATGCCCTCC 3810 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| ||| ||| | | || || || ||| ||||| | ||| Sbjct 3811 TTGTCCTGAATCTTCGCTTTCACATTCTCTATCGAGTCACTCGGCTCAACCTCGAGAGTA 3870 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || | || || |||||||| ||||| Sbjct 3871 ATTGTTTTACCGGTGAGGGTCTTCACAAAAATTTGCAT 3908 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| || | |||| ||| ||| ||||| || ||||| ||||| ||| | || Sbjct 3919 AGACGCAAAACAAGGTGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTGCGT 3978 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||| ||||| |||||||| ||||||| ||||| || | || | |||||| Sbjct 3979 CCATCTTCCAATTGCTTGCCGGCAAAAATCAGTCTTTGTTGGTCTGGTGGGATTCCCTCC 4038 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || |||||| ||||||| | | | || | ||||| || | ||| Sbjct 4039 TTATCTTGAATCTTGGCTTTTACATTCTCAATTGTATCACTAGGTTCCACTTCGAGCGTT 4098 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | ||||||||| ||||||||||| Sbjct 4099 ATAGTCTTCCCAGTAAGAGTTTTTACGAAAATCTGCAT 4136 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || ||||| ||||||||| |||||||||||||| | | | || | || || Sbjct 3472 ACCAAGTGAAGCGTAGACTCTTTTTGTATATTGTAATCAGACAAAGTGCGGCCATCCTCT 3531 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || || |||||||| ||||| || || || ||||| | |||| || ||||| || | Sbjct 3532 AATTGTTTACCGGCGAATATAAGACGTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGA 3591 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || ||||||| | | || || | || || || | ||||| ||||| Sbjct 3592 ATTTTCGCTTTTACATTTTCAATTGAATCACTGGGTTCAACTTCAAGGGTAATAGTTTTA 3651 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | || || || || |||||||| Sbjct 3652 CCAGTTAGGGTCTTGACGAAGATCTGCAT 3680 >seq1635 Length=24574 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || || |||||||| ||||||||| | || |||| |||| ||||||||| || || Sbjct 5598 TCCTTCTGGATATTGTAGTCAGATAGAGTACGTCCGTCTTCCAGCTGCTTACCAGCGAAA 5657 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || ||||| |||||||| | ||| | |||||||||||| |||||| || ||| Sbjct 5658 ATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTC 5717 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || ||| ||||| | || || ||||| || || | || || ||| Sbjct 5718 TCAATCGTGTCACTCGGCTCAACCTCGAGAGTTATTGTTTTACCGGTGAGGGTCTTCACA 5777 Query 48756 AAAATCTGCAT 48766 ||||| ||||| Sbjct 5778 AAAATTTGCAT 5788 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || || |||||||| ||||| ||| | || | || |||| ||| || || || || Sbjct 15465 TCCTTCTGGATATTGTAGTCAGAAAGAGTGCGCCCCTCTTCCAGCTGTTTGCCAGCGAAA 15406 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || ||||| |||||||| | ||| | |||||||||||| |||||| || ||| Sbjct 15405 ATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTC 15346 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || ||| ||||| | ||||| |||||||| || | || || ||| Sbjct 15345 TCAATCGTGTCACTCGGCTCAACCTCGAGAGTAATTGTTTTTCCAGTGAGGGTCTTCACA 15286 Query 48756 AAAATCTGCAT 48766 ||||| ||||| Sbjct 15285 AAAATTTGCAT 15275 >seq14526 Length=1284 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || || |||||||| ||| ||| | || |||| |||| |||||| || || || Sbjct 517 TCCTTCTGGATATTGTAGTCATTAAGAGTACGTCCGTCTTCCAGCTGCTTGCCAGCGAAA 576 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || ||||| |||||||| | ||| | |||||||||||| |||||| ||| ||| Sbjct 577 ATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTTGTCCTGAATCTTCGCTTTCACATTC 636 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | || || || ||| ||||| | ||||| ||||| || || | || || ||| Sbjct 637 TCTATCGAGTCACTCGGCTCAACCTCGAGAGTAATTGTTTTACCGGTGAGGGTCTTCACA 696 Query 48756 AAAATCTGCAT 48766 ||||| ||||| Sbjct 697 AAAATTTGCAT 707 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| || | |||| ||| ||| ||||| || ||||| ||||| ||| | || Sbjct 718 AGACGCAAAACAAGGTGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTGCGT 777 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||| ||||| |||||||| ||||||| ||||| || | || | |||||| Sbjct 778 CCATCTTCCAATTGCTTGCCGGCAAAAATCAGTCTTTGTTGGTCTGGTGGGATTCCCTCC 837 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || |||||| ||||||| | | | || | ||||| || | || Sbjct 838 TTATCTTGAATCTTGGCTTTTACATTCTCAATCGTATCACTAGGTTCCACTTCAAGTGTT 897 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | ||| ||||| ||||||||||| Sbjct 898 ATAGTCTTCCCAGTAAGAGTCTTTACGAAAATCTGCAT 935 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || || | ||||| || ||||| ||||||||| |||||||||||||| Sbjct 937 CCACCTCTAAGTCGTAGAACCAAGTGAAGCGTAGACTCTTTTTGTATATTGTAATCAGAC 996 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | | || | || || || || |||||||| ||||| || || || ||||| | ||| Sbjct 997 AAAGTGCGGCCATCCTCTAATTGTTTACCGGCGAATATAAGACGTTGCTGATCTGGAGGA 1056 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || ||||| || ||| || ||||||| | | || || | || || Sbjct 1057 ATTCCTTCCTTATCTTGAATTTTCGCTTTTACATTTTCAATTGAATCACTGGGTTCAACT 1116 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | ||||| ||||| || || | || || || || |||||||| Sbjct 1117 TCAAGGGTAATAGTTTTACCAGTTAGGGTCTTGACGAAGATCTGCAT 1163 >seq1486 Length=25894 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || ||||||||||| || || || || || || ||||| || |||||| | || Sbjct 18502 AGACGTAACACCAAATGAAGGGTAGATTCCTTCTGGATGTTGTAGTCCGATAGAGTACGG 18443 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | ||| || || ||||| |||| || |||||||| | |||| || ||| Sbjct 18442 CCATCTTCTAGCTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCC 18383 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||| || || ||| | | || ||||| | || || || | || Sbjct 18382 TTATCCTGAATTTTGGCCTTCACATTTTCGATGGAATCTGAAGGTTCAACTTCAAGAGTG 18323 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || ||||| || ||||| |||||||| Sbjct 18322 ATAGTTTTGCCAGTTAAAGTCTTAACAAAGATCTGCAT 18285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380862332920476