Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2 116 7e-21 >seq2 Length=118199 Score = 116 bits (128), Expect = 7e-21 Identities = 362/558 (65%), Gaps = 2/558 (0%) Strand=Plus/Plus Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190 ||||| || || |||||| || ||||| ||||| || | | |||| |||| |||| Sbjct 63183 CAGGCGAAATCTGTGTGCAGACCCTCGTCACGGCTAATCAACTCGTTACTGAAGGTGAGA 63242 Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 || ||||| | || | || || | |||||| || | ||||| || || |||||||| Sbjct 63243 CCCGGCATTAGGCCACGCTTCTTCAACCAGAAGATCGAGGCGAATGAACCCGAGAAGAAA 63302 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAG 48310 | ||||||||||| || ||||| | | | ||| | | | |||| |||| | | Sbjct 63303 ACCCCCTCCACTGCAGCAAACGCCATAACACGCTCCGCATACGTCGCGTCTTTGTTCGCG 63362 Query 48311 ATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGG 48370 ||||| || ||||| || ||||||||||| | ||||||| ||||| || || | Sbjct 63363 ATCCACCTCAGTGCCCAATCCGCCTTCTTCTTCACACATGGCAGAGTCTCAATCGCATTG 63422 Query 48371 AAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATC 48430 ||||| | | || | | || || |||||| || ||| || |||||| Sbjct 63423 AAGAGAAAATCACGCTTGGCCGGCTCTTTCACGTAGGTATCGATGAGCAGTGAATACATC 63482 Query 48431 TCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACC 48490 || ||||| | ||||||| || || || | ||| ||||| | || || | Sbjct 63483 TCCGAGTGGATGTTCTCTACTGCAATTTGCATCCCATAGAAACAACGAGCTTCCGGAATT 63542 Query 48491 TGCACTTCTGTGGAGAATCTC-TCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGC 48549 || || ||| | |||| || | || || |||||| || || || || || || || Sbjct 63543 TGAACCTCTTGGCAGAAGTTCATGCA-CAAATTCTCGTTCACAATTCCGTCACTGGCTGC 63601 Query 48550 AAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCC 48609 ||||| || || || || | || || ||||| | | || | |||| | Sbjct 63602 GAAGAAAGCCAGCACGTGGGAGATAAAGTGACGCTCACCATCATTCAGTCTCTCCCAGTC 63661 Query 48610 CTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTT 48669 | ||||| || ||| || || ||||| ||||||||||| || | ||| || || Sbjct 63662 AGTGAGATCTTTCGTCAAGTCAACCTCCTCCACGGTCCAGAAGGAAGCCACTGCCTTCTT 63721 Query 48670 GTACATGCCCCATATGTC 48687 ||| | ||||||| || Sbjct 63722 GTAGAACTCCCATATATC 63739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931344024878080