Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2 114 2e-20 seq1443 95.1 2e-14 >seq2 Length=118199 Score = 114 bits (126), Expect = 2e-20 Identities = 295/444 (66%), Gaps = 8/444 (2%) Strand=Plus/Minus Query 25595 ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGAT 25654 ||||| |||| ||||| |||||| ||| || || |||||||||||| ||||| || | Sbjct 63618 ACGTGCTGGCTTTCTTCGCAGCCAGTGACGGAATTGTGAACGAGAATTTGTGCATGAACT 63559 Query 25655 TCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCG 25714 || | || || || ||| || |||||||| || | || || || | | Sbjct 63558 TCTGCCAAGAGGTTCAAATTCCGGAAGCTCGTTGTTTCTATGGGATGCAAATTGCAGTAG 63499 Query 25715 AAAATGTGCACTCTGAGGTGTATGCCAAGCTTCT-GATGACGTACATTACAGACGTCGCC 25773 | || | ||||| ||| ||||| | ||| | ||| || ||| | | ||| ||| Sbjct 63498 AGAACATCCACTCGGAGATGTATTCACTGCTCATCGAT-ACCTACGTGAAAGAGCCGGCC 63440 Query 25774 GAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGG 25833 || | ||| || || ||| || ||| | || | | |||| ||||||| Sbjct 63439 AAGCGTGATTTTCTCTTCAATGCGATTGAGACTCTGCCATGTGTGAAGAAGAAGGCGGAT 63380 Query 25834 TGGGCCATGAAGTGGATC---AACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCC 25890 ||||| ||| ||||||| |||| ||| ||| |||| || ||||| | | || Sbjct 63379 TGGGCACTGAGGTGGATCGCGAACAA--AGA-CGCGACGTATGCGGAGCGTGTTATGGCG 63323 Query 25891 TTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAG 25950 |||||||| |||||||| | || ||| ||||| || || | ||||||||| | ||| Sbjct 63322 TTTGCTGCAGTGGAGGGGGTTTTCTTCTCGGGTTCATTCGCCTCGATCTTCTGGTTGAAG 63263 Query 25951 CAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGT 26010 || || ||||| || || ||| |||||| | || ||| | ||||||||| Sbjct 63262 AAGCGTGGCCTAATGCCGGGTCTCACCTTCAGTAACGAGTTGATTAGCCGTGACGAGGGT 63203 Query 26011 CTCCACAGAGATTTTGCCTGCCTG 26034 || |||| |||||| ||||| ||| Sbjct 63202 CTGCACACAGATTTCGCCTGTCTG 63179 >seq1443 Length=26160 Score = 95.1 bits (104), Expect = 2e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 222032 ACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGC 222091 |||||||||||||| || || || ||||| || ||| | ||||||||||| | || | Sbjct 13644 ACCCTCTGCATGAAAAGATCAGGAATCCAGAGAGCCAGGAAGAGATCTCTAGCACGAATC 13703 Query 222092 TCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGC 222151 ||||| | || ||||| | | ||| || | |||| || | |||| ||||| || Sbjct 13704 TCCTCGGCCCCAGTGTTTCTACGCAGCTCTATGAACTGCAAGACATCAGGATGCCAGGGT 13763 Query 222152 TCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCAC 222201 || ||||| | || | ||| ||||| ||||| || ||||| || ||||| Sbjct 13764 TCTAGATATATAGCAAAAGCACCGGGACGCTTATTCCCACCTTGGTCCAC 13813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928656569601280