Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1443 123 3e-23 seq4319 104 3e-17 seq2 95.1 1e-14 >seq1443 Length=26160 Score = 123 bits (136), Expect = 3e-23 Identities = 413/640 (65%), Gaps = 11/640 (2%) Strand=Plus/Minus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| | ||||| ||||| || | | ||||||||||| | || | || ||| | Sbjct 14170 CCGCAGCATATGTTTATGCGCGTGTCCTTGGGCATCCACGGATATGATCTCGAAGCTGCC 14111 Query 75272 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 75331 || ||||| || || ||||| ||| ||||| ||| || | || || |||||| Sbjct 14110 TTTGAGACGTATCACCTAATGTCTCAAAAGTGGTTCACTCAGGCCTCTCCGACTCTCTTC 14051 Query 75332 AATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 75391 ||| | || |||||| || |||||||| || || |||||| || | | ||||| ||| Sbjct 14050 AATTCGGGCACACCAGTTCCTCAGATGTCGAGCTGTTTCCTTCTCACGATGAAGGACGAC 13991 Query 75392 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 75451 ||| | |||||||| | || || | | | ||||| ||||||||| ||||| Sbjct 13990 AGTATCGAGGGTATCTACGATACACTCAAGCAATGTGCCTTGATCTCAAAGAACGCTGGA 13931 Query 75452 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAAT 75511 || |||| | | | ||| | | | ||| || ||| || || ||| Sbjct 13930 GGCGTTGGTCTTAATGTGCATTGTATTCGTAGCAAGGGCACTTTTATCGCCGGAACCAAT 13871 Query 75512 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 75571 ||| |||| |||| | |||| ||||| || || | || ||| || | ||||| Sbjct 13870 GGTGAATCCAATGGCTTGGTTCCCATGCTGCGAGTGTACAATAGCACCGCTAGGTATGTG 13811 Query 75572 AATCAAGCGGG------GCGTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCAT 75625 | |||| || ||||| | || | | || | || | ||||| |||||| Sbjct 13810 GACCAAGGTGGGAATAAGCGTCCC---GGTGCTTTTGCTATATATCTAGAACCCTGGCAT 13754 Query 75626 GCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGT 75685 | ||| || || ||||| | ||| | || ||| || | ||| ||| ||| | Sbjct 13753 CCTGATGTCTTGCAGTTCATAGAGCTGCGTAGAAACACTGGGGCCGAGGAGATTCGTGCT 13694 Query 75686 AGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGT 75745 ||||||||||| | || |||||||| || ||||||||| || ||||| | || | | Sbjct 13693 AGAGATCTCTTCCTGGCTCTCTGGATTCCTGATCTTTTCATGCAGAGGGTTCATGATGAT 13634 Query 75746 GGTCAATGGTCTCTTTTCTGTCCAGAC-AAGGCACCAGGTCTCTCCGACGCGGTGGGTGA 75804 | ||| || | | ||| || || || || ||||| | ||| ||| || Sbjct 13633 GAGATGTGGACTTTCATGGATCCTCACGAATGC-CCCGGTCTGGCAGACTGTTGGGGAGA 13575 Query 75805 GGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGT 75844 |||||| ||||| ||||| | |||||||| | |||||| Sbjct 13574 GGAGTTCGAAGCGCTCTATTCGAAGTATGAGAAAGAGGGT 13535 Score = 86.0 bits (94), Expect = 7e-12 Identities = 162/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 76703 GGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAAGAATCTCTACCGCACAGTG 76762 ||||| ||||| | ||| | || ||||| ||||| ||| | ||| || || Sbjct 12425 GGTTCTATTCAGCACATCGACGGCATTCCAGACGATATTAAGGCGTTGTACAAGACTGTC 12366 Query 76763 TGGGAAAT-CAAGATGAAAGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGA 76821 ||||| || | | | |||| | ||||| | || |||||||||| || ||||| || Sbjct 12365 TGGGAGATTCCACA-GAAAACGATTATTGATCTAGCTGCAGATCGTGCTCCTTTCATAGA 12307 Query 76822 TCAAAGTCAAAGTATGAATCTATTCATGGAA-AGTCCAACGATGTCCAAGCTCTCTTCTA 76880 ||| ||||| ||||||| |||| | | ||||| ||| ||| || |||| | Sbjct 12306 TCAGAGTCAGTCGTTGAATCTCCACATGAAGGAACCCAACTATGGT-AAGATCACTTCCA 12248 Query 76881 TGCATATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTACTATCTCCGA 76933 ||||| | || |||||||| |||| || || || ||||||||||| |||||| Sbjct 12247 TGCATTTCTATGCGTGGAAGAAGGGACTGAAGACTGGAATGTACTACCTCCGA 12195 >seq4319 Length=12421 Score = 104 bits (114), Expect = 3e-17 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 13553 GGTATTCCCAAGTTGGATGACGCGAACAAGGCGGGTACGGCACAATCTGGAAAGTGTACT 13612 ||||| || ||| ||||||| || ||| | ||||| || | || || |||||| Sbjct 9878 GGTATCCCGAAGCTGGATGATGCCAACGACGCGGGAACAAAGAATTCAATTAATTGTACT 9819 Query 13613 CTCATTGTCACAGAGGGTGATTCGGCTAAAACCCTCGCGGTTGCGGGTCTCTCTGTCGTT 13672 |||||| |||| ||||| ||||| || |||||| | ||||| || |||||||| || || Sbjct 9818 CTCATTCTCACCGAGGGAGATTCAGCCAAAACCTTAGCGGTGGCTGGTCTCTCAGTGGTC 9759 Query 13673 GGTCGTGATCACTACGGTGTGTTCCCACTTCGCGGTAAAT 13712 |||||||||| || ||||| || ||| | ||||||| Sbjct 9758 GGTCGTGATCGATATGGTGTCTTTCCATTGAAGGGTAAAT 9719 >seq2 Length=118199 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 65005 ACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACA-CAAAGTC 65063 ||| | |||||| | ||||||||||| | |||||| ||| ||| | | | ||||| | Sbjct 63409 ACTCTGCCATGTGTGAAGAAGAAGGCGGATTGGGCACTGAGGTGGATCGCGAACAAAGAC 63350 Query 65064 TCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGG 65123 || | | || ||||| || | |||||||| |||||||| | |||||||| || Sbjct 63349 GCGA-CGTATGCGGAGCGTGTTATGGCGTTTGCTGCAGTGGAGGGGGTTTTCTTCTCGGG 63291 Query 65124 GTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTC 65183 |||||| | | || | |||||||||||||| || || ||||| || || |||| Sbjct 63290 TTCATTCGCCTCGATCTTCTGGTTGAAGAAGCGTGGCCTAATGCCGGGTCTCACCTTCAG 63231 Query 65184 AAATGAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || || | ||| ||| || |||||||| ||| Sbjct 63230 TAACGAGTTGATTAGCCGTGACGAGGGTCTGCAC 63197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596448705170560