Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1486 152 1e-31 seq14526 150 4e-31 seq4364 140 6e-28 >seq1486 Length=25894 Score = 152 bits (168), Expect = 1e-31 Identities = 176/237 (74%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 192304 ATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAA 192363 |||| |||||| | ||||||||| || ||||| | |||| || || ||| || || Sbjct 18517 ATAACACCACCACGAAGACGTAACACCAAATGAAGGGTAGATTCCTTCTGGATGTTGTAG 18458 Query 192364 TCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCA 192423 || |||| || || |||| || | ||||| ||||||||||| || | |||||||| Sbjct 18457 TCCGATAGAGTACGGCCATCTTCTAGCTGTTTGCCAGCAAAGATCAAACGTTGTTGATCT 18398 Query 192424 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGAT 192483 || || || ||||| ||||| || ||||| || ||||| || |||||||| | | Sbjct 18397 GGAGGAATACCTTCCTTATCCTGAATTTTGGCCTTCACATTTTCGATGGAATCTGAAGGT 18338 Query 192484 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTA 192540 || ||||| ||||| || ||||| |||||||| || |||| ||| |||||||| ||| Sbjct 18337 TCAACTTCAAGAGTGATAGTTTTGCCAGTTAAAGTCTTAACAAAGATCTGCATATTA 18281 >seq14526 Length=1284 Score = 150 bits (166), Expect = 4e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||||||||| |||| || || || | |||| |||||| ||||| |||||| Sbjct 934 ATACCACCTCTAAGTCGTAGAACCAAGTGAAGCGTAGACTCTTTTTGTATATTGTAATCA 993 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || || || |||| || ||||||||||| || || || | | || ||||| || Sbjct 994 GACAAAGTGCGGCCATCCTCTAATTGTTTACCGGCGAATATAAGACGTTGCTGATCTGGA 1053 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| |||||||| ||||| ||||||||| || ||||| | ||| Sbjct 1054 GGAATTCCTTCCTTATCTTGAATTTTCGCTTTTACATTTTCAATTGAATCACTGGGTTCA 1113 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| || ||||| ||||||||||||| || || | || ||||||||| Sbjct 1114 ACTTCAAGGGTAATAGTTTTACCAGTTAGGGTCTTGACGAAGATCTGCATT 1164 >seq4364 Length=12272 Score = 140 bits (154), Expect = 6e-28 Identities = 166/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 192313 CCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAAT 192372 |||||||| |||| || || || | |||| |||||| ||||| |||||||| || Sbjct 3457 CCTCTAAGTCGTAGAACCAAGTGAAGCGTAGACTCTTTTTGTATATTGTAATCAGACAAA 3516 Query 192373 GTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATT 192432 || || |||| || ||||||||||| || || || | | || ||||| || || ||| Sbjct 3517 GTGCGGCCATCCTCTAATTGTTTACCGGCGAATATAAGACGTTGCTGATCTGGAGGAATT 3576 Query 192433 CCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCT 192492 ||||| |||||||| ||||| ||||||||| || ||||| | ||| ||||| Sbjct 3577 CCTTCCTTATCTTGAATTTTCGCTTTTACATTTTCAATTGAATCACTGGGTTCAACTTCA 3636 Query 192493 AGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || ||||| ||||||||||||| || || | || ||||||||| Sbjct 3637 AGGGTAATAGTTTTACCAGTTAGGGTCTTGACGAAGATCTGCATT 3681 Score = 96.9 bits (106), Expect = 7e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||| || | || | ||||| || | || || |||||| || || || Sbjct 7055 ACCACCACGAAGGCGAAGCACAAGATGTAGGGTGGATTCCTTTTGGATATTGTAGTCCGA 6996 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | || || |||| || | || || ||||||||||| | | |||||| || || || Sbjct 6995 GAGGGTACGACCATCTTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCTGGGGG 6936 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || ||||| || ||||| || ||| || ||||| ||| | ||| | || || Sbjct 6935 AATGCCTTCCTTGTCTTGAATCTTAGCCTTAACATTCTCTATGGTATCACTGGGCTCGAC 6876 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||| || ||||||||||||||||| | || || | ||| |||||||| Sbjct 6875 TTCAAGTGTAATGGTTTTACCAGTGAGAGTCTTCACAAAAATCTGCAT 6828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984275507506200