Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq14526 141 2e-28 seq4364 131 3e-25 >seq14526 Length=1284 Score = 141 bits (156), Expect = 2e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||||||||||| || || || | |||| |||||| ||||| ||||| Sbjct 934 ATACCACCTCTAAGTCGTAGAACCAAGTGAAGCGTAGACTCTTTTTGTATATTGTAATCA 993 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || |||| || | || || ||||||||||| || || || | | || || || || Sbjct 994 GACAAAGTGCGGCCATCCTCTAATTGTTTACCGGCGAATATAAGACGTTGCTGATCTGGA 1053 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| |||||||| ||||| ||||||||| || | ||| | ||| Sbjct 1054 GGAATTCCTTCCTTATCTTGAATTTTCGCTTTTACATTTTCAATTGAATCACTGGGTTCA 1113 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| || ||||| ||||||||||||| || || | ||| ||||||||| Sbjct 1114 ACTTCAAGGGTAATAGTTTTACCAGTTAGGGTCTTGACGAAGATCTGCATT 1164 >seq4364 Length=12272 Score = 131 bits (144), Expect = 3e-25 Identities = 164/225 (73%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 171846 CCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAA 171905 ||||||||||||| || || || | |||| |||||| ||||| ||||| || ||| Sbjct 3457 CCTCTAAGTCGTAGAACCAAGTGAAGCGTAGACTCTTTTTGTATATTGTAATCAGACAAA 3516 Query 171906 GATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATT 171965 | || | || || ||||||||||| || || || | | || || || || || ||| Sbjct 3517 GTGCGGCCATCCTCTAATTGTTTACCGGCGAATATAAGACGTTGCTGATCTGGAGGAATT 3576 Query 171966 CCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCT 172025 ||||| |||||||| ||||| ||||||||| || | ||| | ||| ||||| Sbjct 3577 CCTTCCTTATCTTGAATTTTCGCTTTTACATTTTCAATTGAATCACTGGGTTCAACTTCA 3636 Query 172026 AGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || ||||| ||||||||||||| || || | ||| ||||||||| Sbjct 3637 AGGGTAATAGTTTTACCAGTTAGGGTCTTGACGAAGATCTGCATT 3681 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || || |||||||| || | | ||||||||| || || || ||||| || ||||| || Sbjct 6973 TGCTTGCCAGCAAAGATAAGACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGAATC 6914 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 ||| || ||||| ||| ||||| | || ||||| || ||||||||||||||| Sbjct 6913 TTAGCCTTAACATTCTCTATGGTATCACTGGGCTCGACTTCAAGTGTAATGGTTTTACCA 6854 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 || | || || | || |||||||| Sbjct 6853 GTGAGAGTCTTCACAAAAATCTGCAT 6828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904952574189600