Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1335 111 5e-19 seq931 95.1 4e-14 >seq1335 Length=27242 Score = 111 bits (122), Expect = 5e-19 Identities = 223/326 (68%), Gaps = 6/326 (2%) Strand=Plus/Minus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| ||||| | |||||| ||||| ||||||||| | ||||| ||||| ||| Sbjct 19451 TCCATAGCTTTGATAAGACGACGTTGAATGTAACCAGTTTCTGCAGTTTTGACAGCAGTA 19392 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTC--TTCCGGTCGTAGCC 302692 ||||| | ||| ||||||||||||| |||||||| || | ||| || ||| || | Sbjct 19391 TCAATCAAACCTTCACGACCACCCATGGCATGGAAAAAAAACTCAGTTGGAGTC--AGGC 19334 Query 302693 CCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGG-TA 302751 || ||| | |||| |||| || ||||| | | ||| || | ||| | ||||| | Sbjct 19333 CCGCAAGATAGGAATTCTCTACAAAACCCCTAGACTCAGGACCGTAGTC-ATCTTGGATG 19275 Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811 || || || ||||| | | | || | ||||| || || || || ||||||||| Sbjct 19274 AAATGAGGAAGGGTTCGATGGCGGAAACCAAAGGGGATTCGTTTACCCTCCACGTTCTGC 19215 Query 302812 TGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCCAGCATTT 302871 || |||| || | ||| | || || || || | | |||||| || |||| | Sbjct 19214 TGCCCCACACAGGCAATAACTTGTGAGATGTTGATTTTGGAGCCCTTTGAACCAGAAACA 19155 Query 302872 ACCATAATAACAAACCTGTTATTCTT 302897 |||||| || || |||||| ||| Sbjct 19154 ACCATAGTATTGAAATTGTTATACTT 19129 Score = 87.8 bits (96), Expect = 5e-12 Identities = 134/189 (71%), Gaps = 3/189 (2%) Strand=Plus/Minus Query 303627 TTGGGGCATATGTAAATTCATCTCATCACCGTCAAAATCAGCATTATACGGCTTTGTGTC 303686 ||| |||| ||| | ||||| || || ||||||||||| || || ||||| ||| | Sbjct 18366 TTGAGGCAAATGAAGGTTCATTTCGTCGCCGTCAAAATCTGCGTTGTACGGAGAAGTGAC 18307 Query 303687 CGCAACGTTCATCCGGAAAGTATCACCCTGCATCATAACACGGGCTTTATGACACATCAT 303746 | | ||| | ||||||||| ||| | || |||||| | ||| |||||||| Sbjct 18306 AGACAAGTTGAGACGGAAAGTAG-ACCAAGG--CAAAACACGCACACGATGGCACATCAT 18250 Query 303747 AGACATTCTGTGTAGAGTTGGCTGACGATTGAAAAGCACGGGGTCACCGTTTAATACATG 303806 |||||| | || |||||||| ||||||||||| | ||| ||| | || || | ||| Sbjct 18249 GGACATTTTATGAAGAGTTGGTTGACGATTGAATACCACAAAGTCGTCATTCAACATATG 18190 Query 303807 ACGATGAAC 303815 ||| | ||| Sbjct 18189 ACGTTCAAC 18181 >seq931 Length=32098 Score = 95.1 bits (104), Expect = 4e-14 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 233273 GCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTT 233332 ||||| ||||||||| ||||||||| ||||||||||| | ||| ||||||||||| || Sbjct 15893 GCACCATGAGCAATCTGACAATCACGCTCCATTTCACCGAAACGTAGACCACCATCTCTT 15834 Query 233333 GACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATAATTA 233392 || | || | | || ||||||| | | | ||| || ||| ||| | | Sbjct 15833 GAACGGCCTTCCATTGGTTGACGATTGAGGATTTGCACTGGGCCACGAGAACGGGAGTGG 15774 Query 233393 ATTTTATCTTTAACCATATGCTTCAGTCTCATATAATAACACGGACC 233439 |||||||| | |||||||||||||| || | ||||||| ||||| Sbjct 15773 ATTTTATCATCAACCATATGCTTCAATCGCTGATAATAAGTAGGACC 15727 Score = 93.3 bits (102), Expect = 1e-13 Identities = 153/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 252472 TCCATAAGACGAGTATCAACAAGCGGTCTCATCGGGTAAGATAGAACATATGCTGTCTTA 252531 |||||| |||||| |||||| ||| | || || ||||||||| | || Sbjct 14747 TCCATAGAACGAGTTGTAACAAGAGGTTTTTGGGGATAGTATAGAACATTGGACAGGGTA 14688 Query 252532 TCCATCCTATTATCATAATTTGTAACATACATACCAAGCGCCTGCTTTCCCATAGCACTC 252591 ||||| | | | | ||||||||| ||||| ||| | ||||| || |||||||||||| Sbjct 14687 TCCATTCGAGTGTGGAAATTTGTAATATACACACCCATAGCCTGTTTGCCCATAGCACTC 14628 Query 252592 TGGTAAGTATTTCTGGGAGACTGATTGTTTTCCGGGAAAGGAATGCATGAT-GCTACAAC 252650 || || ||||| | || ||||| |||| || ||| || || || | || || Sbjct 14627 TGATAGGTATTACGAGGGGACTGGTTGTGATCACAGAAGGGGAT-AATACTGGCGCAAAT 14569 Query 252651 ACCGAAGATAGTGCTTGGGTGAATTTCACAGTGACTGT 252688 ||| ||||| | ||||| ||||||||||||||| ||| Sbjct 14568 ACCCAAGATCATACTTGGATGAATTTCACAGTGAGTGT 14531 Score = 87.8 bits (96), Expect = 5e-12 Identities = 163/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 251484 TGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCG 251543 |||||| || | |||| ||||||||||||||||||||||||||| ||||||||||| | Sbjct 15894 TGCACCATGAGCAATCTGACAATCACGCTCCATTTCACCGAAACGTAGACCACCATCTCT 15835 Query 251544 AGCCCTACCCTCGGCAGGCTGACGAGTGA-GATTAACCATAGGAC-CGATGGAGCGGCTA 251601 | | || || || |||||| ||| |||| | | || | ||| || ||| Sbjct 15834 TGAACGGCCTTCCATTGGTTGACGATTGAGGATTTGCACTGGGCCACGA--GAACGGGAG 15777 Query 251602 TGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGATG 251661 || ||||||| ||||||||||| | ||||| || | | ||||| | |||||| Sbjct 15776 TGGATTTTATCATCAACCATATGCTTCAATCGCTGATAATAAGTAGGACCCAAGAAGAT- 15718 Query 251662 CTCGAAG--GCATTTGCTCTCCAGTTAGAGCGTTATACATAACTTCGTTTCC 251711 | | || | || || ||| || | | |||||||||||| ||| || || Sbjct 15717 TTGGGAGTTGAGCTTTCT-TCCGGTGAAACCGTTATACATAATTTCATTCCC 15667 Score = 86.0 bits (94), Expect = 2e-11 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 251843 CGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCAT 251902 ||||||||||||||||||| ||||| || |||||||| || ||||| || | | || | Sbjct 15457 CGATAGTCATACGACTGGGGATAGCGTGAGGATTGATAATAATGTCTGGAGTGATACCTT 15398 Query 251903 CAGCAGTGAAGGGCATATCCTTTTCCTCAATAATGTTTCCAATAGTTCCCTTTTGTCCGT 251962 || ||||||||||||||||| || || | | ||| || |||||||| |||| Sbjct 15397 CACAAGTGAAGGGCATATCCTCTTGACGAAGGAGAATACCACAGGTACCCTTTTGACCGT 15338 Query 251963 GACGAGA 251969 | || || Sbjct 15337 GGCGGGA 15331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471511879567444