Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1838 86.0 8e-11 >seq1838 Length=22891 Score = 86.0 bits (94), Expect = 8e-11 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 1592111 CGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCACCCTC 1592170 || ||||| || ||||| ||||| |||| || | ||| || || || ||| Sbjct 1673 CGAACCGATGATATCTCTAGTTGGGATCAGGAATTCCTCCGCGTTGATCAAGGAACTCTC 1614 Query 1592171 TTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGC 1592230 |||||| | || | ||||| ||||||||||| || ||| || |||||| | ||| Sbjct 1613 TTTGAGCTCATTTTGGCCGCGAACTACCTCGATATTAAGGGACTTCTCGATACATGCTGC 1554 Query 1592231 AAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAAC 1592290 || || || || |||||||| || || || |||| ||||| || || || ||||| || Sbjct 1553 AAATCGGTTGCTAACATGATAAAAGGGAAAACGCCTGAGGAAATTCGAAAAACCTTCAAT 1494 Query 1592291 ATCAA 1592295 ||||| Sbjct 1493 ATCAA 1489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105808767359204