Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq14526 138 1e-27 seq4364 138 1e-27 seq1486 131 2e-25 seq1635 86.0 6e-12 >seq14526 Length=1284 Score = 138 bits (152), Expect = 1e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || ||||| |||||||||||||| || ||||| ||| ||| Sbjct 1163 ATGCAGATCTTCGTCAAGACCCTAACTGGTAAAACTATTACCCTTGAAGTTGAACCCAGT 1104 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| |||||| || || ||||| || |||||||| ||||| ||||| Sbjct 1103 GATTCAATTGAAAATGTAAAAGCGAAAATTCAAGATAAGGAAGGAATTCCTCCAGATCAG 1044 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | || || ||||| ||||| | |||||| | | |||| ||||| || Sbjct 1043 CAACGTCTTATATTCGCCGGTAAACAATTAGAGGATGGCCGCACTTTGTCTGATTACAAT 984 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || ||||| || || || || |||||||| Sbjct 983 ATACAAAAAGAGTCTACGCTTCACTTGGT 955 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | || || || ||||||||||| ||||| ||||| || || | | Sbjct 707 ATGCAAATTTTTGTGAAGACCCTCACCGGTAAAACAATTACTCTCGAGGTTGAGCCGAGT 648 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | |||| | || ||| ||||| || ||||| || || || || || |||||| Sbjct 647 GACTCGATAGAGAATGTGAAAGCGAAGATTCAGGACAAGGAGGGCATCCCCCCAGATCAA 588 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 ||||| | || || || || || |||||||| || Sbjct 587 CAACGACTCATTTTCGCTGGCAAGCAGCTGGAAGA 553 >seq4364 Length=12272 Score = 138 bits (152), Expect = 1e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || ||||| |||||||||||||| || ||||| ||| ||| Sbjct 3680 ATGCAGATCTTCGTCAAGACCCTAACTGGTAAAACTATTACCCTTGAAGTTGAACCCAGT 3621 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| |||||| || || ||||| || |||||||| ||||| ||||| Sbjct 3620 GATTCAATTGAAAATGTAAAAGCGAAAATTCAAGATAAGGAAGGAATTCCTCCAGATCAG 3561 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | || || ||||| ||||| | |||||| | | |||| ||||| || Sbjct 3560 CAACGTCTTATATTCGCCGGTAAACAATTAGAGGATGGCCGCACTTTGTCTGATTACAAT 3501 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || ||||| || || || || |||||||| Sbjct 3500 ATACAAAAAGAGTCTACGCTTCACTTGGT 3472 Score = 120 bits (132), Expect = 3e-22 Identities = 154/211 (73%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 ||||||||||| ||| | || || || || |||||||| ||||| || ||||| || || Sbjct 6825 ACGATGCAGATTTTTGTGAAGACTCTCACTGGTAAAACCATTACACTTGAAGTCGAGCCC 6884 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | || || |||| | || || ||||| |||||||| ||||| || || || || Sbjct 6885 AGTGATACCATAGAGAATGTTAAGGCTAAGATTCAAGACAAGGAAGGCATTCCCCCAGAC 6944 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 ||||| ||| | |||||||| || || ||||| || ||| | | | | || || || Sbjct 6945 CAACAGCGTCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGTCGTACCCTCTCGGACTAC 7004 Query 24881 AACATTCAAAAGGAATCGACACTACA-CTTG 24910 || || ||||||||||| || ||||| |||| Sbjct 7005 AATATCCAAAAGGAATCCACCCTACATCTTG 7035 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | ||||| || || || || ||||| ||||||||||| ||| | | Sbjct 4136 ATGCAGATTTTCGTAAAAACTCTTACTGGGAAGACTATAACGCTCGAAGTGGAACCTAGT 4077 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | || | |||||| ||||| ||||| || || ||||| || || || ||| Sbjct 4076 GATACAATTGAGAATGTAAAAGCCAAGATTCAAGATAAGGAGGGAATCCCACCAGACCAA 4017 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | |||| |||||||| || || |||| ||| | | | || || || ||| Sbjct 4016 CAAAGACTGATTTTTGCCGGCAAGCAATTGGAAGATGGACGCACTCTTTCTGACTACAAC 3957 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || |||||||| || || ||||| | || ||||| Sbjct 3956 ATCCAAAAGGAGTCCACCTTACACCTTGTTTTGCG 3922 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | || || || ||||||||||| ||||| ||||| || || | | Sbjct 3908 ATGCAAATTTTTGTGAAGACCCTCACCGGTAAAACAATTACTCTCGAGGTTGAGCCGAGT 3849 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | |||| | || ||| ||||| || ||||| || || || || || |||||| Sbjct 3848 GACTCGATAGAGAATGTGAAAGCGAAGATTCAGGACAAGGAGGGCATCCCCCCAGATCAA 3789 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| | || || || || || ||| |||| || | | | || || || || Sbjct 3788 CAACGACTCATTTTCGCTGGCAAGCAGTTGGAAGACGGACGTACTCTATCTGACTACAAT 3729 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || |||||||| || ||||| | ||| | ||| | || || || Sbjct 3728 ATCCAGAAGGAATCTACTCTACATCTAGTGCTTCGACTTCGTGGTGG 3682 >seq1486 Length=25894 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| |||| || |||| || |||||||| || || ||||| ||| | | Sbjct 18285 ATGCAGATCTTTGTTAAGACTTTAACTGGCAAAACTATCACTCTTGAAGTTGAACCTTCA 18344 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || | | |||| || || || || || || || ||||| || ||||| |||||| Sbjct 18345 GATTCCATCGAAAATGTGAAGGCCAAAATTCAGGATAAGGAAGGTATTCCTCCAGATCAA 18404 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||||||||||||||| || |||||||| || ||| | | | || || || ||| Sbjct 18405 CAACGTTTGATCTTTGCTGGCAAACAGCTAGAAGATGGCCGTACTCTATCGGACTACAAC 18464 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || |||||||| || || || |||||||| || Sbjct 18465 ATCCAGAAGGAATCTACCCTTCATTTGGTGTTACG 18499 >seq1635 Length=24574 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | || || || || || ||||| ||||| ||||| || || | | Sbjct 15275 ATGCAAATTTTTGTGAAGACCCTCACTGGAAAAACAATTACTCTCGAGGTTGAGCCGAGT 15334 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| || || || || || |||||| Sbjct 15335 GACACGATTGAGAATGTGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCCCCAGATCAA 15394 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| | || || || || ||||||||||| || | | | | || || || || Sbjct 15395 CAACGACTCATTTTCGCTGGCAAACAGCTGGAAGAGGGGCGCACTCTTTCTGACTACAAT 15454 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || |||||||| || || || | ||| | || | ||||| || Sbjct 15455 ATCCAGAAGGAATCAACTCTCCATCTTGTGCTTCGTCTTCGCGGTGG 15501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449806428251360