Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq2 131 3e-24 seq1652 111 2e-18 seq447 89.7 8e-12 >seq2 Length=118199 Score = 131 bits (144), Expect = 3e-24 Identities = 227/330 (69%), Gaps = 9/330 (3%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| || || ||||| ||||| || ||| ||| || ||||| ||||| ||||| Sbjct 63203 ACCCTCGTCACGGCTAATCAACTCGTTACTGAAGGTGAGACCCGGCATTAGGCCACGCTT 63262 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||| | ||| ||||| | ||| |||||||| || | ||||| || || ||||| Sbjct 63263 CTTCAACCAGAAGATCGAGGCGAATGAACCCGAGAAGAAAACCCCCTCCACTGCAGCAAA 63322 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTT---GATCCACTTCATCGC 794516 | | | ||||| ||| | || | |||||||| ||||||| ||| || Sbjct 63323 CGCCATAACACGCTCCGCATACGTCGCG------TCTTTGTTCGCGATCCACCTCAGTGC 63376 Query 794517 CCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTT 794576 ||| || ||||| ||| |||| | |||| || || || || ||||| || Sbjct 63377 CCAATCCGCCTTCTTCTTCACACATGGCAGAGTCTCAATCGCATTGAAGAGAAAATCACG 63436 Query 794577 CTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTT 794636 || | |||| || || |||||||| |||||||| || || || |||| ||||||||||| Sbjct 63437 CTTGGCCGGCTCTTTCACGTAGGTATCGATGAGCAGTGAATACATCTCCGAGTGGATGTT 63496 Query 794637 TTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 || | || || || | ||||| || || Sbjct 63497 CTCTACTGCAATTTGCATCCCATAGAAACA 63526 >seq1652 Length=24454 Score = 111 bits (122), Expect = 2e-18 Identities = 169/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| || || |||||||| || || ||||||||||| ||| | |||| ||| ||| | | Sbjct 17684 TGTATTTAGTAACGGCCTTTGTGCCTTCTGAGACGGCATGCTTAGCCAATTCACCGGGTA 17743 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || ||| ||||| || ||||||||||||||| || ||| || |||||| | Sbjct 17744 AGAGCAGACGCACAGCAGTCTGGATCTCGCGGCTGGTGATAGTTGATTTCTTGTTGTAGT 17803 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||| | | | ||| | | | || || |||| ||||| || || || ||||||| Sbjct 17804 GGGCCAGCCTACTTGACTCTGCGGCAATACGTTCGAAGATGTCATTAACGAAAGAGTTCA 17863 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||| | || ||| || || || || ||||| || || ||||||| Sbjct 17864 TGATAGACATAGCCTTTGAGGAAATACCAGTATCAGGATGCACTTGGCGCAGAACCTTGT 17923 Query 1485710 A 1485710 | Sbjct 17924 A 17924 >seq447 Length=43816 Score = 89.7 bits (98), Expect = 8e-12 Identities = 165/242 (68%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 ||||||| || ||||| || || ||||||| || ||| ||||||| || || ||| | Sbjct 5826 ACTTGGTAACCGCCTTAGTGCCTTCTGAGATAGCATGCTTGGCCAGCTCACCAGGCAATA 5767 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCG 1485592 |||| ||||| || ||||| |||||||| | | ||| | | |||| | | | Sbjct 5766 TCAGTCGCACAGCTGTCTGAATCTCGCGACTAGTCAGAGTGCTTTTCCTGTTGTAGTGAG 5707 Query 1485593 CCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGA 1485652 ||| ||| ||||| | | | ||||| || | || || | || || |||||||||| Sbjct 5706 TCAGTTTGCCTGCCTCAGAGGCTATGCGTTCAAAGATATCAATCACGAAGGAGTTCATGA 5647 Query 1485653 TCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAAA 1485712 | ||||| | || |||||||| | |||| ||| || || | |||||||| | Sbjct 5646 TAGACATGGCCTTTGAAGAGATGCCTATATCGGTGTGAACTTGACGCAAGACCTTGTAGA 5587 Query 1485713 CA 1485714 || Sbjct 5586 CA 5585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7914521855617068