Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq14526 136 6e-27 seq4364 132 8e-26 >seq14526 Length=1284 Score = 136 bits (150), Expect = 6e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | || || |||| || ||||| ||||| |||| || |||| | | Sbjct 1162 TGCAGATCTTCGTCAAGACCCTAACTGGTAAAACTATTACCCTTGAAGTTGAACCCAGTG 1103 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 || | ||| ||||||||||| ||||| ||| ||| ||||| ||||| || ||||| | Sbjct 1102 ATTCAATTGAAAATGTAAAAGCGAAAATTCAAGATAAGGAAGGAATTCCTCCAGATCAGC 1043 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | || || || || |||||||||||||| ||| | || || | ||||| |||| Sbjct 1042 AACGTCTTATATTCGCCGGTAAACAATTAGAGGATGGCCGCACTTTGTCTGATTACAATA 983 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 |||||||||| || || | || || || ||||| | ||||| |||| Sbjct 982 TACAAAAAGAGTCTACGCTTCACTTGGTTCTACGACTTAGAGGTGGTA 935 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| |||| || | || || || || || || |||| || |||| || | Sbjct 934 TGCAGATTTTCGTAAAGACTCTTACTGGGAAGACTATAACACTTGAAGTGGAACCTAGTG 875 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||||||| || || ||| ||| || || || ||||| || |||| Sbjct 874 ATACGATTGAGAATGTAAAAGCCAAGATTCAAGATAAGGAGGGAATCCCACCAGACCAAC 815 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGAT 146186 ||||||| |||||||| || || ||||| || ||| Sbjct 814 AAAGACTGATTTTTGCCGGCAAGCAATTGGAAGAT 780 >seq4364 Length=12272 Score = 132 bits (146), Expect = 8e-26 Identities = 163/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | || || |||| || ||||| ||||| |||| || |||| | | Sbjct 3679 TGCAGATCTTCGTCAAGACCCTAACTGGTAAAACTATTACCCTTGAAGTTGAACCCAGTG 3620 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 || | ||| ||||||||||| ||||| ||| ||| ||||| ||||| || ||||| | Sbjct 3619 ATTCAATTGAAAATGTAAAAGCGAAAATTCAAGATAAGGAAGGAATTCCTCCAGATCAGC 3560 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | || || || || |||||||||||||| ||| | || || | ||||| |||| Sbjct 3559 AACGTCTTATATTCGCCGGTAAACAATTAGAGGATGGCCGCACTTTGTCTGATTACAATA 3500 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGG 146254 |||||||||| || || | || || || ||||| | ||||| Sbjct 3499 TACAAAAAGAGTCTACGCTTCACTTGGTTCTACGACTTAGAGG 3457 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| ||||||| | || || || || || || | || || |||| || | Sbjct 4135 TGCAGATTTTCGTAAAAACTCTTACTGGGAAGACTATAACGCTCGAAGTGGAACCTAGTG 4076 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||||||| || || ||| ||| || || || ||||| || |||| Sbjct 4075 ATACAATTGAGAATGTAAAAGCCAAGATTCAAGATAAGGAGGGAATCCCACCAGACCAAC 4016 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGAT 146186 ||||||| |||||||| || || ||||| || ||| Sbjct 4015 AAAGACTGATTTTTGCCGGCAAGCAATTGGAAGAT 3981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786007083379040