Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq1486 168 5e-37 seq1635 96.9 3e-15 seq2850 84.2 2e-11 >seq1486 Length=25894 Score = 168 bits (186), Expect = 5e-37 Identities = 172/222 (77%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| | |||||||||||| || ||||| || || ||||| || |||| | || || Sbjct 18500 ACGTAACACCAAATGAAGGGTAGATTCCTTCTGGATGTTGTAGTCCGATAGAGTACGGCC 18441 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || |||||||||||| | ||||| | ||| ||||| || |||||||| || || Sbjct 18440 ATCTTCTAGCTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCCTT 18381 Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 || || |||||| | || ||| |||| | | || ||| |||| ||||||||||| | Sbjct 18380 ATCCTG-AATTTTGGCCTTCACATTTTCGATGGAATCTGAAGGTTCAACTTCAAGAGTGA 18322 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAA 29791 |||||||||||||||| || |||||||| |||||||| |||| Sbjct 18321 TAGTTTTGCCAGTTAAAGTCTTAACAAAGATCTGCATATTAA 18280 >seq1635 Length=24574 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| ||||| | ||| || || ||||| || || || || || || | || ||||| Sbjct 15490 ACGAAGCACAAGATGGAGAGTTGATTCCTTCTGGATATTGTAGTCAGAAAGAGTGCGCCC 15431 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || || ||||||||||| | || | || ||| ||||| || || || ||||| || Sbjct 15430 CTCTTCCAGCTGTTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTT 15371 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||| || ||| || | || ||| | || | |||||| | || || || ||||| | Sbjct 15370 GTCCTG-AATCTTCGCCTTCACATTCTCAATCGTGTCACTCGGCTCAACCTCGAGAGTAA 15312 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | ||||| ||||| | ||| || ||||| || ||||| Sbjct 15311 TTGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 15275 >seq2850 Length=17461 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/218 (69%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||| || ||| || | |||| || ||||||||||| || | | | || ||| Sbjct 12156 ACGCAACAACAAGTGTAAATTGGAGTCCTTTTGAATGTTGTAGTTGGAGAAAGTACGATC 12215 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | || ||||| |||||||||||||||||| || || || |||||||| Sbjct 12216 ATCTTCCAACTGCCTGCCACCATATATCAATCTTTGCTCTTCTATTGGGATTCCCTCTTT 12275 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||| ||| |||| || ||| | || | | ||| || | || || ||||||| Sbjct 12276 CTCTT-CAATCTTTGCCTTCACATTCTCAATAAAATCATTTTGTCCAACCTCGAGAGTTA 12334 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || ||||| || | ||||| || || ||||||||| Sbjct 12335 TAATTTTGTCACCAACAGTTTTGACGAAGATCTGCATT 12372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385143086945892