Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq5843 241 1e-57 seq2737 147 2e-29 seq14732 138 8e-27 seq1335 134 1e-25 >seq5843 Length=8949 Score = 241 bits (266), Expect = 1e-57 Identities = 936/1454 (64%), Gaps = 18/1454 (1%) Strand=Plus/Minus Query 281431 CACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCT 281490 |||||| | ||||||||||| || | || || || || || || ||||| || || | Sbjct 7287 CACATTCAAGATACCATTGGCGTCTATGTCGAAGGTCACCTCTATCTGAGGCACACCACG 7228 Query 281491 CTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAA 281550 |||| || ||||| || ||| | ||| | |||| ||| ||||| ||||| | Sbjct 7227 AGGAGCCGGAGGGATGCCAGACAACTCAAACTTCCCCAACAGATTGTTATCCTTAGTCAT 7168 Query 281551 TTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGT 281610 || ||||||||| | | || || || | | || || || || || || || Sbjct 7167 CGAACGCTCACCCTCGTACACCTGAATCAACACACCTGGCTGGTTGTCCGAGTACGTAGT 7108 Query 281611 AAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAA 281669 || |||| | | ||| |||||||| || || | | || | | ||||| | Sbjct 7107 GAAGG-TCTGTGTCTGTTTGGTTGGAATTGTAGTATTGCGTTTGATGAGAGGTGTCATCA 7049 Query 281670 TACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTT 281729 |||||| || || || | ||||||||| | ||||| | ||| | |||| | || | Sbjct 7048 CACCACCCGCGGTCTCCAGACCAAGAGACAATGGAGTAATATCCAAGAGGAGCAGATCCT 6989 Query 281730 GAAGTTTTTCATCAGTTTGACCA-ACAAGAATAGCTGCTTGAATAGCAGCACCATATGCA 281788 | | | || | | ||| |||| | | || || || | ||| || || || || Sbjct 6988 GCACTGCCTCCGACTTGTCACCTGACAATATT-GCCGCCTGCACAGCCGCTCCGTACGCC 6930 Query 281789 ACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT-TGAAAG 281847 || || || || ||||| | | | || | | ||| ||||| || | || | Sbjct 6929 ACTGCCTCGTCCGGATTGATCGACTTGTTCAACTCACGACCGTTGAAGAAGTCCTGCAGC 6870 Query 281848 AAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTG 281907 || || | ||||| |||||||| | || ||||||||||||||||||||||| | Sbjct 6869 AACTTCTGC-ACCTTTGGAATACGCGTCGAACCTCCAACTAATACAATTTCATGGATTAA 6811 Query 281908 TGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAA 281967 ||||||| ||| | ||| | |||| ||||| ||| |||| |||| || Sbjct 6810 GCCCTTATCCATTTTAGCATCACGCAGGGCTTTCTCAACTGGTATAAGAGTGTCTCTGAA 6751 Query 281968 CAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCC 282027 || || ||||||||| |||||| ||| | ||||| ||| || |||| || || Sbjct 6750 CAGATCACCACAAAGTTCCTCGAATCGAGCACGAGTAATGGTGGTATAGAAATCTATGCC 6691 Query 282028 TTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGC 282087 || ||||| || || | || || | | |||| ||| || | | || || Sbjct 6690 CTCAAACAATGAGTCGATCTCGATATTGGCCTGAGCACTGGAACTGAGGGTTCTCTTTGC 6631 Query 282088 ACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGA--TTCAAATCTGTT 282145 | || | ||| || |||| | || | ||| | || ||| || | || | Sbjct 6630 CCTCTCGCTTGCAGTTCTTAAACGACGAATAGCTCT--CTTATTTCCCTTTATGTCCTTC 6573 Query 282146 TTATATTTTCTCTTGAAATCTTCAACACACCATGTT--ACAAGACGATTATCAAAATCTT 282203 || || ||| |||||| || | | || | ||| | || | ||||||||||||||||| Sbjct 6572 TTGTACTTTTGCTTGAATTCGTTAGCAAA--ATGATTAACCAAACGATTATCAAAATCTT 6515 Query 282204 CACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAG 282263 |||| ||||| | || | || | || | | || | ||| | || || |||| | Sbjct 6514 CACCACCCAAGTGCGTGTCACCAGCAGTCGACTTCACCTCGAAGATGCCGTCCTCAATCG 6455 Query 282264 ACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTT 282323 | | || | |||||| ||| || ||||||| |||||| || | ||||| ||| Sbjct 6454 AGAGAATGGACACATCAAAGGTGCCGCCACCCAAATCAAAGATCAACACATTGCGTTCAG 6395 Query 282324 TGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTC 282383 | || || || | ||||||||| | ||||| ||||| || || || || |||| Sbjct 6394 CTCCCACCTTCTTGTCCAAACCATACGCGATGGCAGCCGCAGTGGGCTCGTTGATGATTC 6335 Query 282384 TCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGT 282443 | ||| || | || | || || ||||| || |||||||| | || | |||| Sbjct 6334 GAAGAACGTTCAAGCCCGATATGGCACCAGCATCCTTCGTGGCTTGACGCTGACAGTCGT 6275 Query 282444 TAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTG 282503 | || || || || |||||||| || |||||| | ||| ||| |||| ||||| | Sbjct 6274 TGAAGTAGGCCGGCACAGTAATGACTGCATCTTTCACTGTTTTCCCAAGGTAAGCCTCAG 6215 Query 282504 CTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGG 282563 |||| | ||||| || || | ||| || || || | ||||| | | | ||| Sbjct 6214 CTGTCTCCTTCATCTTCAACAACACCATGGAGGAGATCTCTTCTGCAAAGAACGACTTCT 6155 Query 282564 ATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATG 282623 ||| | || ||| || | | ||||| ||| | || | || | || | Sbjct 6154 TCTCACCCTTGTACATTACCTCGATCTTCGGTTTGCCTCCAGCGTTGACCACATGGAAAG 6095 Query 282624 GCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATC-TCTACCAATTAATCGT 282682 |||||| ||||||||| || ||| ||| || || |||| | |||||| | ||| Sbjct 6094 GCCAATGTTTCATATCATCCTGTACAACTTGATC-TTCGAATCGACGACCAATAAGACGT 6036 Query 282683 TTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCA 282742 || || || || | || ||| || || | || |||| | || |||||||| ||| Sbjct 6035 TTGGCGTCGAACACTGTGTTGTCAGGGTTCATGGCTACTTGGTTCTTAGCTGCATCGCCA 5976 Query 282743 ATCAGATGTTC-TGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATC 282801 |||| | | || ||| ||||| || | ||||| ||||| || ||||| || ||||| Sbjct 5975 ATCAAACGCTCGTGT-TCTGTGAACGCGACATAACTAGGAGTAGTACGATTGCCCTGATC 5917 Query 282802 ATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCC 282861 ||| ||||| || ||||| || |||| ||| | ||||| ||||| ||||| ||||| Sbjct 5916 ATTTGCAATGATATCAACCTTGCCATGTTGGAACACACCAACACAGGAGAAAGTGGTTCC 5857 Query 282862 TAAATCAATACCAA 282875 ||||| ||||||| Sbjct 5856 CAAATCTATACCAA 5843 >seq2737 Length=17923 Score = 147 bits (162), Expect = 2e-29 Identities = 386/585 (66%), Gaps = 8/585 (1%) Strand=Plus/Plus Query 282265 CAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTT 282324 ||| |||| ||||| ||| |||||||||| ||| || | ||| | ||| |||| | Sbjct 15613 CAAGAGAGAGACATCGAAGGTGCCACCACCCAAATCGAATACAAGGATGTTCTTTTCGCT 15672 Query 282325 GTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCT 282384 |||| | ||||| | ||| || |||| ||| || |||||||||||||| || || | Sbjct 15673 TTCTT---TCTTATCCAAACCGTAGGCAATAGCTGCGGCAGTTGGTTCATTGATGATACG 15729 Query 282385 CAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTT 282444 | | | | ||||||||||| ||||||||||| || ||||| | ||| | ||| || Sbjct 15730 AAGGATAGTTAGACCAGCAATGGCACCTGCATCTTTGGTTGCTTGACGTTGAGCATCATT 15789 Query 282445 AAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGC 282504 || || || || || || | ||||||| || || | || | |||||| || Sbjct 15790 GAAGTAGGCTGGCACGGTCACTACGGCATGGGTAACCGGAGTACCGAGATAAGCCTCAGC 15849 Query 282505 TGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGA 282564 | ||||| || | |||| ||| | || | || ||| |||| | |||| Sbjct 15850 AACCTCCTTCATCTTGCCCAAAACCATGGCCGAGACTTCTTCAGGAGCGAAAGCCTTGAC 15909 Query 282565 TTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGG 282624 |||| | | ||||| | |||||||| | ||| || || ||||| || || Sbjct 15910 CTCATCGCCAACTTGAACTTCCATGTATGGTTTGTCACCCTTCTTGATGACTTTGAAAGG 15969 Query 282625 CCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTT 282684 | ||||||||| |||||| | |||| ||| || || || | || || Sbjct 15970 ATATCGTTTCATATCCTCCTGAACATCCTTATCATCAAAGGTTCGGCCTATAAGACGCTT 16029 Query 282685 TGCATCAAAAATAGTATTGGTTGGATTAACTG-CAGCTTGATATTTGGCTGCATCTCCAA 282743 |||||||||| |||||| | || || || ||| ||| | |||||| ||||| || | Sbjct 16030 GGCATCAAAAAGAGTATTTCTAGGGTTCGATGTCAG-TTGGTTTTTGGCAGCATCGCCGA 16088 Query 282744 TCAGATGTT---CTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGAT 282800 | ||| ||| | || | ||| || | || || || || || | || || || |||| Sbjct 16089 TAAGACGTTCACCAGTGTTTGTGAAAGCGACGTACGACGGTGTGATACGGTTGCCCTGAT 16148 Query 282801 CATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACAC 282845 | || || || |||||||| ||||||| | ||||| |||| Sbjct 16149 CGTTTGCGATGATTTCAACCCGTCCATTTTTGAAGACACCAACAC 16193 Score = 138 bits (152), Expect = 8e-27 Identities = 353/538 (66%), Gaps = 6/538 (1%) Strand=Plus/Plus Query 281417 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 281476 ||||| |||||| ||| | |||| || || |||| | |||||||||||||| ||| Sbjct 14771 TTATCTTCGGCAGACACTTGCAGAAGGCCGTTCACATCAATTTCAAATGTGACTTCGATT 14830 Query 281477 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 281536 || |||| || | |||| || || || || | || ||| | |||| || | Sbjct 14831 TGTGGGATACCGCGTGGAGCCGGAGGAATGCCAGTAAGATCGAATTTACCCAAGAAATGA 14890 Query 281537 TTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTA 281596 |||||||| || || |||||||| || | | ||||| || || | ||| | | Sbjct 14891 TTATCTTTGGTCAAGGGACGTTCACCTTCATAGACCTGGATGGTGACAGTTGGTTGGTCA 14950 Query 281597 TCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATA 281656 || | | ||| | || ||| || || || ||||||| ||||| || |||| Sbjct 14951 TCAGCAGCAGTAGAGAAGACTTGAGACTTCTTTGTAGGAATTACGGTGTTCCTGCCAATG 15010 Query 281657 ATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACT 281716 | || ||||||| ||||||| | || || | ||| |||| ||| || |||||||| Sbjct 15011 AGTTTTGTCATAACACCACCAACAGTCTCAATACCCAGAGTAAGTGGGCAGACATCAAGA 15070 Query 281717 AGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCA 281776 || || |||| | | |||| | |||| | | | | ||||| | |||| Sbjct 15071 AGAACGATATCACCAGTATCTTCAAC------ACCACTTATGACACCAGCTTGCACAGCA 15124 Query 281777 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 281836 ||||||||||||||||| |||||||| || | | | ||| | || ||||||||| Sbjct 15125 GCACCATATGCAACAGCCTCATCAGGGTTGATACCTCTGCTTAACTCCTTGCCATTGAAA 15184 Query 281837 AAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATT 281896 || | | | |||| | ||||| ||||| | || || || ||||| || ||||| Sbjct 15185 AATTCTTTGACGAGTTCTTGAACCTTTGGAATTCTAGTCGAGCCACCAACCAAGACAATA 15244 Query 281897 TCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAA 281954 ||||| | | | ||| | || | || ||| | ||| ||||| || |||| || Sbjct 15245 TCATGAATATCTTCTTTTTTGAGATCCGAGTCCTTCATAACATTTTCTACTGGTTTAA 15302 >seq14732 Length=1210 Score = 138 bits (152), Expect = 8e-27 Identities = 185/255 (73%), Gaps = 2/255 (1%) Strand=Plus/Plus Query 282620 AATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCT-CTACCAATTAA 282678 || ||||||| ||||||||| || ||| ||| || || |||| | |||||| | Sbjct 157 AAGGGCCAATGTTTCATATCATCCTGTACAACTTGATC-TTCGAATCGACGACCAATGAG 215 Query 282679 TCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATC 282738 ||||| |||||||||||||| ||| ||||| | || | || | || || ||||| Sbjct 216 ACGTTTGGCATCAAAAATAGTGTTGACAGGATTCATAGCCACCTGGTTCTTAGCAGCATC 275 Query 282739 TCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTG 282798 || |||||| | || || || || || | ||||| |||||| | ||||| || || Sbjct 276 ACCGATCAGACGCTCGGTGTCGGTGAAAGCGACATAACTTGGAGTGATTCGATTGCCCTG 335 Query 282799 ATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGT 282858 ||||| ||||||||||| || || |||| ||| | ||||| |||||| || ||||| Sbjct 336 GTCATTAGCAATAATTTCCACCTTGCCATGTTGAAACACACCAACACAAGAGAAGGTTGT 395 Query 282859 TCCTAAATCAATACC 282873 ||| ||||| ||||| Sbjct 396 TCCCAAATCGATACC 410 >seq1335 Length=27242 Score = 134 bits (148), Expect = 1e-25 Identities = 172/232 (74%), Gaps = 9/232 (4%) Strand=Plus/Plus Query 432283 TGAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTG 432342 ||| ||| |||| |||||||||||||| || |||||||| || ||||| || | |||| Sbjct 17876 TGAAAGGCAAAGCTGGTCGTATTAGAGGCAACTTGATGGGCAAACGTGTTGACTTTTCTG 17935 Query 432343 CACGTACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTC--T 432400 | || |||||||||||| ||||||| ||| |||| || || ||||||| ||||| | | Sbjct 17936 CTCGGACAGTTATTACTGCTGATCCAAATCTTGCCCTTGATCAAGTTGGAGTTCCCCGAT 17995 Query 432401 CATTATTGCGAAAAATCTTACTTTTGACGAAATTGTAACAGAACATAATATTGATTATTT 432460 || ||||| | ||||| || || ||| || || || ||||||||||| | Sbjct 17996 CA--ATTGCTCAGAATCTCACGTTCCCTGAACGCGTCACTCAAGCGAATATTGATTACCT 18053 Query 432461 GACTCA-ATTAGTGAAAAATGGTAAAAGAGTATATCCAGGTGCCAATTTTGT 432511 || | ||||||||| ||||||| | | |||||||| ||||| ||||| Sbjct 18054 -ACAAAGATTAGTGAATAATGGTACCA---TGTATCCAGGAGCCAAGTTTGT 18101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739834459311912