Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq14526 190 4e-43 seq4364 187 5e-42 seq1486 176 9e-39 seq1635 165 2e-35 seq6236 86.0 1e-11 seq4608 86.0 1e-11 >seq14526 Length=1284 Score = 190 bits (210), Expect = 4e-43 Identities = 180/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||| | || ||||| ||||| || ||||| ||||| |||||||| ||||||| Sbjct 935 TACCACCTCTAAGTCGTAGAACCAAGTGAAGCGTAGACTCTTTTTGTATATTGTAATCAG 994 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | | || || |||| |||||| || || || || || | ||| |||||||||| Sbjct 995 ACAAAGTGCGGCCATCCTCTAATTGTTTACCGGCGAATATAAGACGTTGCTGATCTGGAG 1054 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | |||||||||||||||||||| || ||||||||||||||||| | |||| | ||||| | Sbjct 1055 GAATTCCTTCCTTATCTTGAATTTTCGCTTTTACATTTTCAATTGAATCACTGGGTTCAA 1114 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||| | || || || || || || | ||||| || || ||||||||| Sbjct 1115 CTTCAAGGGTAATAGTTTTACCAGTTAGGGTCTTGACGAAGATCTGCATT 1164 Score = 183 bits (202), Expect = 6e-41 Identities = 170/216 (79%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||||| ||| | ||| | || || || || || || || || ||||| ||| | | || Sbjct 720 ACGCAAAACAAGGTGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTGCGTCC 779 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| | ||| || || ||||| || ||||||||||| ||||| || ||||| ||||| Sbjct 780 ATCTTCCAATTGCTTGCCGGCAAAAATCAGTCTTTGTTGGTCTGGTGGGATTCCCTCCTT 839 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 |||||||||||| ||||||||||| |||||||||||| ||||||| ||||| | ||||| Sbjct 840 ATCTTGAATCTTGGCTTTTACATTCTCAATCGTATCACTAGGTTCCACTTCAAGTGTTAT 899 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || | |||||||| || |||||||| Sbjct 900 AGTCTTCCCAGTAAGAGTCTTTACGAAAATCTGCAT 935 Score = 143 bits (158), Expect = 5e-29 Identities = 162/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || |||| || ||||| ||||| ||||| ||||| || ||| ||| | | || Sbjct 492 ACGAAGCACTAGATGGAGAGTTGATTCCTTCTGGATATTGTAGTCATTAAGAGTACGTCC 551 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 |||||| || || || ||||| || || |||| |||||||||||| || || || ||||| Sbjct 552 GTCTTCCAGCTGCTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTT 611 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || |||||||| ||||| ||||| || |||| ||| | || || || || | ||| || Sbjct 612 GTCCTGAATCTTCGCTTTCACATTCTCTATCGAGTCACTCGGCTCAACCTCGAGAGTAAT 671 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || || || || | ||||| ||||| || |||||| Sbjct 672 TGTTTTACCGGTGAGGGTCTTCACAAAAATTTGCATT 708 Score = 89.7 bits (98), Expect = 1e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || |||| || ||||||||||| ||||| ||||| || ||||||||| | | ||| Sbjct 1177 CGAAGCACTAGATGTAGAGTAGATTCCTTCTGGATATTGTAGTCAGATAGAGTACGTCCG 1236 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 ||||| | || || ||||| || || |||| |||||||||||| || Sbjct 1237 TCTTCCAACTGCTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGGG 1283 >seq4364 Length=12272 Score = 187 bits (206), Expect = 5e-42 Identities = 182/235 (77%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 82577 TCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATA 82636 |||| | | ||||| | || ||||| ||||| || ||||| ||||| |||||||| || Sbjct 3447 TCACATTCTNCCTCTAAGTCGTAGAACCAAGTGAAGCGTAGACTCTTTTTGTATATTGTA 3506 Query 82637 ATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATC 82696 |||||| | | | | || || |||| |||||| || || || || || | ||| ||||| Sbjct 3507 ATCAGACAAAGTGCGGCCATCCTCTAATTGTTTACCGGCGAATATAAGACGTTGCTGATC 3566 Query 82697 TGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGG 82756 |||||| |||||||||||||||||||| || ||||||||||||||||| | |||| | || Sbjct 3567 TGGAGGAATTCCTTCCTTATCTTGAATTTTCGCTTTTACATTTTCAATTGAATCACTGGG 3626 Query 82757 TTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||| ||||| | || || || || || || | ||||| || || ||||||||| Sbjct 3627 TTCAACTTCAAGGGTAATAGTTTTACCAGTTAGGGTCTTGACGAAGATCTGCATT 3681 Score = 174 bits (192), Expect = 3e-38 Identities = 168/216 (78%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||||| ||| | ||| | || || || || || || || || ||||| ||| | | || Sbjct 3921 ACGCAAAACAAGGTGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTGCGTCC 3980 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| | ||| || || ||||| || ||||||||||| ||||| || ||||| ||||| Sbjct 3981 ATCTTCCAATTGCTTGCCGGCAAAAATCAGTCTTTGTTGGTCTGGTGGGATTCCCTCCTT 4040 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 |||||||||||| ||||||||||| ||||| |||||| ||||||| ||||| | ||||| Sbjct 4041 ATCTTGAATCTTGGCTTTTACATTCTCAATTGTATCACTAGGTTCCACTTCGAGCGTTAT 4100 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || | || ||||| || |||||||| Sbjct 4101 AGTCTTCCCAGTAAGAGTTTTTACGAAAATCTGCAT 4136 Score = 156 bits (172), Expect = 8e-33 Identities = 164/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || |||| || ||||||||||| ||||| ||||| || ||||||||| | | ||| Sbjct 3694 CGAAGCACTAGATGTAGAGTAGATTCCTTCTGGATATTGTAGTCAGATAGAGTACGTCCG 3753 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| | || || ||||| || || |||| |||||||||||| || || || ||||| Sbjct 3754 TCTTCCAACTGCTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTTG 3813 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || |||||||| ||||| ||||| || |||| ||| | || || || || | ||| || Sbjct 3814 TCCTGAATCTTCGCTTTCACATTCTCTATCGAGTCACTCGGCTCAACCTCGAGAGTAATT 3873 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || || || || | ||||| ||||| || |||||| Sbjct 3874 GTTTTACCGGTGAGGGTCTTCACAAAAATTTGCATT 3909 Score = 136 bits (150), Expect = 8e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || || ||||| || || ||||| || || || || | | ||| ||||| || || Sbjct 7030 TGTAGGGTGGATTCCTTTTGGATATTGTAGTCCGAGAGGGTACGACCATCTTCAAGCTGC 6971 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| || | ||||| ||||| || || |||||||| ||||||||||| Sbjct 6970 TTGCCAGCAAAGATAAGACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGAATCTTA 6911 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || ||||| || || |||||| | || || ||||| | || || || || || || Sbjct 6910 GCCTTAACATTCTCTATGGTATCACTGGGCTCGACTTCAAGTGTAATGGTTTTACCAGTG 6851 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||||| ||||| |||||||| Sbjct 6850 AGAGTCTTCACAAAAATCTGCAT 6828 Score = 111 bits (122), Expect = 3e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || |||| || ||||| ||||| ||||| ||||| || ||| ||| | | || Sbjct 3310 ACGAAGCACTAGATGGAGAGTTGATTCCTTCTGGATATTGTAGTCATTAAGAGTACGTCC 3369 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 |||||| || || || ||||| || || |||| |||||||||||| || || || ||||| Sbjct 3370 GTCTTCCAGCTGCTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTT 3429 Query 82715 ATCTTGAATCTTTGCTTTTACATT 82738 || |||||||| ||||| ||||| Sbjct 3430 GTCCTGAATCTTCGCTTTCACATT 3453 >seq1486 Length=25894 Score = 176 bits (194), Expect = 9e-39 Identities = 168/214 (79%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 || || || || |||||||| ||||| || || || || |||||| | | || |||||| Sbjct 18493 ACCAAATGAAGGGTAGATTCCTTCTGGATGTTGTAGTCCGATAGAGTACGGCCATCTTCT 18434 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 || ||||| ||||||||||| | | ||||||||||||||| || ||||||||||| ||| Sbjct 18433 AGCTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTATCCTGA 18374 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 || || || || |||||||| || | ||| |||||| ||||| | ||| || || ||| Sbjct 18373 ATTTTGGCCTTCACATTTTCGATGGAATCTGAAGGTTCAACTTCAAGAGTGATAGTTTTG 18314 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCATTATTA 82815 || || || ||||| ||||| ||||||| ||||| Sbjct 18313 CCAGTTAAAGTCTTAACAAAGATCTGCA-TATTA 18281 >seq1635 Length=24574 Score = 165 bits (182), Expect = 2e-35 Identities = 166/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | || ||||||||||| ||||| ||||| || ||||||||| | | || Sbjct 5573 ACGAAGCACAAGATGGAGAGTAGATTCCTTCTGGATATTGTAGTCAGATAGAGTACGTCC 5632 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 |||||| || || || ||||| || || |||| |||||||||||| || || || ||||| Sbjct 5633 GTCTTCCAGCTGCTTACCAGCGAAAATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTT 5692 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || |||||||| || || ||||| |||||||| ||| | || || || || | |||||| Sbjct 5693 GTCCTGAATCTTCGCCTTCACATTCTCAATCGTGTCACTCGGCTCAACCTCGAGAGTTAT 5752 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || || | ||||| ||||| || ||||| Sbjct 5753 TGTTTTACCGGTGAGGGTCTTCACAAAAATTTGCAT 5788 Score = 150 bits (166), Expect = 4e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | || ||||| ||||| ||||| ||||| || ||||| ||| | | || Sbjct 15490 ACGAAGCACAAGATGGAGAGTTGATTCCTTCTGGATATTGTAGTCAGAAAGAGTGCGCCC 15431 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| || ||||| ||||| || || |||| |||||||||||| || || || ||||| Sbjct 15430 CTCTTCCAGCTGTTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTT 15371 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || |||||||| || || ||||| |||||||| ||| | || || || || | ||| || Sbjct 15370 GTCCTGAATCTTCGCCTTCACATTCTCAATCGTGTCACTCGGCTCAACCTCGAGAGTAAT 15311 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || || | ||||| ||||| || ||||| Sbjct 15310 TGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 15275 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 82629 ATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTT 82688 || || || ||||| ||| | | || ||||| | || | || ||| | | |||||| Sbjct 5835 ATTTTGTAGTCAGAAAGAGTGCGTCCATCTTCCAACTGCTGGCCGGCATAAACCAGTCTT 5894 Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTA 82748 ||||| ||| | || | ||| ||||||||| ||||||| ||||||||||| || || ||| Sbjct 5895 TGTTGGTCTTGTGGGACTCCCTCCTTATCTCGAATCTTGGCTTTTACATTCTCGATTGTA 5954 Query 82749 TCATTAGGTTCTACTTC 82765 ||| ||||||| ||||| Sbjct 5955 TCACTAGGTTCCACTTC 5971 Score = 91.5 bits (100), Expect = 3e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || |||| || ||||| ||||| ||||| ||||| || ||| ||| | | || Sbjct 16511 ACGAAGCACTAGATGTAGAGTTGATTCCTTCTGGATATTGTAGTCATTAAGAGTACGTCC 16452 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 |||||| || || || ||||| || || |||| |||||||||||| || || || ||||| Sbjct 16451 GTCTTCCAGCTGCTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTT 16392 Query 82715 ATCTTGAA 82722 || |||| Sbjct 16391 GTCCTGAA 16384 >seq6236 Length=8203 Score = 86.0 bits (94), Expect = 1e-11 Identities = 122/169 (72%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 82617 GATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCA 82676 ||| | | ||| ||||| || ||||| ||| | | ||||||| || || | ||| || Sbjct 6514 GATCCATCCTGGATATTGTAGTCAGAAAGAGTAATTGCGTCTTCCAGCTGCTGGCCACCA 6573 Query 82677 AAGATTAGTCTTTGTTGATCTGGAG-GTATTCCTTCCTTATCTTGAATCTTTGCTTTTAC 82735 || | |||||||| | || || | |||| || || ||||||||||||| ||||| || Sbjct 6574 AATAGCAGTCTTTGATTGTCAGGCGTGTAT-CCATCTATATCTTGAATCTTGGCTTTCAC 6632 Query 82736 ATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCT 82784 || |||| |||||||| ||| | || || | | ||| || |||||| Sbjct 6633 ATCCTCAAGAGTATCATTCGGTCCCACGTCGAGAACTATGGTTTTGCCT 6681 >seq4608 Length=11636 Score = 86.0 bits (94), Expect = 1e-11 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 82605 AAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGT 82664 || |||| ||||| | || || | ||| || ||||| | | | | | | ||||| | Sbjct 1633 AACTGCAAGGTAGAATACTTTTGAAGATTGTAGTCAGAGAAAGTACGATCATCTTCCAAC 1692 Query 82665 TGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATC 82724 || | ||| || | || | |||||||| ||| || | || | | | ||||| ||| Sbjct 1693 TGCCTCCCACCATATATCAATCTTTGTTCTTCTCTCGGGAATCTTACTTCCTCTTGGATC 1752 Query 82725 TTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCT 82784 || ||||| ||||| ||||| |||||||||||| | ||||| | |||||| || || | Sbjct 1753 TTGGCTTTCACATTCTCAATTGTATCATTAGGTACAACTTCGAGAGTTATAGTTCTGGCA 1812 Query 82785 GTCAACGTCTTTACAAATATCTGCA 82809 | | || || || || ||||||| Sbjct 1813 GCAAGAGTTTTGACGAAGATCTGCA 1837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981623258535868