Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq4364 105 6e-18 seq1443 91.5 1e-13 seq14526 87.8 2e-12 >seq4364 Length=12272 Score = 105 bits (116), Expect = 6e-18 Identities = 148/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGAGC 133514 ||||| |||||| || || || |||||||| || | | | | |||| || || ||| Sbjct 7031 ATGTAGGGTGGATTCCTTTTGGATATTGTAGTC--CGAGAGGGTACGACCATCTTCAAGC 6974 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| || | || || ||||| ||||| || || |||||||||||||| ||| Sbjct 6973 TGCTTGCCAGCAAAGATAAGACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGAATC 6914 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||| | | ||| | || || ||||||| || || | || | |||||| || Sbjct 6913 TTAGCCTTAACATTCTCTATGGTATCACTGGGCTCGACTTCAAGTGTAATGGTTTTACCA 6854 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| || || ||||||||||| Sbjct 6853 GTGAGAGTCTTCACAAAAATCTGCAT 6828 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 133458 TGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTG 133516 |||| ||||||||| || || || ||||| || | ||| | | | || || | || Sbjct 3934 TGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTGCGTCCA-TCTTCCAATTG 3992 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| || |||| || | || ||||| || ||||| || ||||| || ||||| Sbjct 3993 CTTGCCGGCAAAAATCAGTCTTTGTTGGTCTGGTGGGATTCCCTCCTTATCTTGAATCTT 4052 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 || | | ||||| || || | || ||||| |||| || | || || || || Sbjct 4053 GGCTTTTACATTCTCAATTGTATCACTAGGTTCCACTTCGAGCGTTATAGTCTTCCCAGT 4112 Query 133637 CAGAGTTTTTACGAAAATCTGCATG 133661 |||||||||||||||||||||||| Sbjct 4113 AAGAGTTTTTACGAAAATCTGCATG 4137 >seq1443 Length=26160 Score = 91.5 bits (100), Expect = 1e-13 Identities = 221/332 (67%), Gaps = 12/332 (4%) Strand=Plus/Plus Query 148044 AGATTAAACGACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGT 148103 ||||| |||||||| ||||| || ||||| | |||| || || || | ||||| | | Sbjct 12286 AGATTCAACGACTGACTCTGATCTATGAAAGGAGCACGATCTGCAGCTAGATCAATAA-T 12344 Query 148104 CGCTTTATCTTCA-TCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCC 148162 || ||| | | | |||||||| | |||||||||| | ||| |||| || |||||||| Sbjct 12345 CGTTTTCTGTGGAATCTCCCAGACAGTCTTGTACAACGCCTTAATATCGTCTGGAATGCC 12404 Query 148163 GTCGATGCGCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTT-----CGTCC 148217 ||||||| |||| | || || | | |||| | ||||| |||| | || Sbjct 12405 GTCGATGTGCTGAATAGAACCCTGATTGGCAA-----TTATTGCCAATTTGAGGGCCTCA 12459 Query 148218 GTGTATAGGTTGAGCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCG 148277 | | | | | ||||| ||||| | || | ||| || | ||| || || Sbjct 12460 GACCAAATGCCCAAATCGATGAGGTCTCTCAACATGTGGCTATTGACAATCTGGAAATCT 12519 Query 148278 CCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTG 148337 || | || || || ||| | | || || ||||||| |||||| |||||| |||| Sbjct 12520 CCAGAAAGAACACGACGCGAAAATACATTACTCGTAATGGGTTCAGTTGACTCGGTGTTT 12579 Query 148338 CCCAAAATCTGCGCGGTCGTTGCCGTGGGCAT 148369 |||| || || || || | ||| |||||||| Sbjct 12580 CCCAGGATTTGAGCAGTTGATGCAGTGGGCAT 12611 >seq14526 Length=1284 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||| || ||||||||||| ||| ||||||| || || || || || |||||||| ||||| Sbjct 552 GTCTTCCAGCTGCTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTT 611 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| ||||| || | | ||| | || ||| | ||||| || |||| || | Sbjct 612 GTCCTGAATCTTCGCTTTCACATTCTCTATCGAGTCACTCGGCTCAACCTCGAGAGTAAT 671 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| ||||| || || || || ||||| ||||| Sbjct 672 TGTTTTACCGGTGAGGGTCTTCACAAAAATTTGCAT 707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483322834774880