Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1335 98.7 2e-15 >seq1335 Length=27242 Score = 98.7 bits (108), Expect = 2e-15 Identities = 155/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 304883 AATTTACAATATCATATTGCAACATTAATGGATAATGAAATTGCTGGAATTATGC---AG 304939 ||||| ||||||||| |||| || | || ||||| || ||| |||| | ||| || Sbjct 17773 AATTTGCAATATCATGTTGCCACGCTTATTGATAACGATATTCCTGG---TTTGCCAAAG 17829 Query 304940 GCATCTCAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAG 304999 || ||||| ||| || |||||| | ||| |||| || ||| | ||||| |||| Sbjct 17830 GCTATTCAAAAATCCGGAAGACCTCTTAAGTCCATTAAACAGCGCCTGAAAGGCAAAGCT 17889 Query 305000 GGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATC 305059 ||||||||| |||| || | ||||| ||||||||||| ||| ||| | | || || Sbjct 17890 GGTCGTATTAGAGGCAACTTGATGGGCAAACGTGTTGACTTTTCTGCTCGGACAGTTATT 17949 Query 305060 ACACCTGATTCTCAAATTAGTCTTCATGAATTAGGAGTTCC 305100 || ||||| | | || ||| || || | |||||||| Sbjct 17950 ACTGCTGATCCAAATCTTGCCCTTGATCAAGTTGGAGTTCC 17990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186566279695732