Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq14526 122 6e-23 seq1486 116 2e-21 seq4364 114 8e-21 >seq14526 Length=1284 Score = 122 bits (134), Expect = 6e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| | |||| ||||| || || || |||||||||||| |||||||| || Sbjct 936 ACCACCTCTAAGTCGTAGAACCAAGTGAAGCGTAGACTCTTTTTGTATATTGTAATCAGA 995 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||||| | || || |||||||| ||||| || || | ||| ||||||||| | || Sbjct 996 CAAAGTGCGGCCATCCTCTAATTGTTTACCGGCGAATATAAGACGTTGCTGATCTGGAGG 1055 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| || || ||||||| | || |||| || | | || || | ||| | Sbjct 1056 AATTCCTTCCTTATCTTGAATTTTC-GCTTTTACATTTTCAATTGAATCACTGGGTTCAA 1114 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| || || |||||||| |||| || || || ||||||||||| Sbjct 1115 CTTCAAGGGTAATAGTTTTACCAGTTAGGGTCTTGACGAAGATCTGCAT 1163 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| || || | |||| ||| ||| ||||| |||||||| || || Sbjct 709 CCACCACGGAGACGCAAAACAAGGTGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAA 768 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||||| | || |||||||| || ||||||||||||| | || || ||| | || Sbjct 769 AGAGTGCGTCCATCTTCCAATTGCTTGCCGGCAAAAATCAGTCTTTGTTGGTCTGGTGGG 828 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || || || ||| || | || |||| || | || || || | |||||| Sbjct 829 ATTCCCTCCTTATCTTGAATCTT-GGCTTTTACATTCTCAATCGTATCACTAGGTTCCAC 887 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| || || || || || || | || ||||| || ||||||||| Sbjct 888 TTCAAGTGTTATAGTCTTCCCAGTAAGAGTCTTTACGAAAATCTGCATA 936 >seq1486 Length=25894 Score = 116 bits (128), Expect = 2e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | ||||||||||||||| || || || || || |||||||| || | Sbjct 18513 CACCACCACGAAGACGTAACACCAAATGAAGGGTAGATTCCTTCTGGATGTTGTAGTCCG 18454 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | || || || | || || | ||||| || ||||| |||||||| || |||||| | | Sbjct 18453 ATAGAGTACGGCCATCTTCTAGCTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAG 18394 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | |||||| || || |||||| ||| |||| || | || || | ||| Sbjct 18393 GAATACCTTCCTTATCCTGAATTTTGGCCTTC-ACATTTTCGATGGAATCTGAAGGTTCA 18335 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || |||| ||||| ||||| || ||||| || || ||||||||||||||| Sbjct 18334 ACTTCAAGAGTGATAGTTTTGCCAGTTAAAGTCTTAACAAAGATCTGCATA 18284 >seq4364 Length=12272 Score = 114 bits (126), Expect = 8e-21 Identities = 162/225 (72%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 33526 CCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGT 33585 ||||| | |||| ||||| || || || |||||||||||| |||||||| || | Sbjct 3457 CCTCTAAGTCGTAGAACCAAGTGAAGCGTAGACTCTTTTTGTATATTGTAATCAGACAAA 3516 Query 33586 GTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACA 33645 ||||| | || || |||||||| ||||| || || | ||| ||||||||| | || | Sbjct 3517 GTGCGGCCATCCTCTAATTGTTTACCGGCGAATATAAGACGTTGCTGATCTGGAGGAATT 3576 Query 33646 CCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTC 33704 ||||| || || ||||||| | || |||| || | | || || | ||| || || Sbjct 3577 CCTTCCTTATCTTGAATTTTC-GCTTTTACATTTTCAATTGAATCACTGGGTTCAACTTC 3635 Query 33705 AACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || || |||||||| |||| || || || ||||||||||| Sbjct 3636 AAGGGTAATAGTTTTACCAGTTAGGGTCTTGACGAAGATCTGCAT 3680 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| || || | |||| ||| ||| ||||| |||||||| || || Sbjct 3910 CCACCACGGAGACGCAAAACAAGGTGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAA 3969 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||||| | || |||||||| || ||||||||||||| | || || ||| | || Sbjct 3970 AGAGTGCGTCCATCTTCCAATTGCTTGCCGGCAAAAATCAGTCTTTGTTGGTCTGGTGGG 4029 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || || || ||| || | || |||| || | || || || | |||||| Sbjct 4030 ATTCCCTCCTTATCTTGAATCTT-GGCTTTTACATTCTCAATTGTATCACTAGGTTCCAC 4088 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||| || || || || || | |||||||| || |||||||| Sbjct 4089 TTCGAGCGTTATAGTCTTCCCAGTAAGAGTTTTTACGAAAATCTGCAT 4136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328639053431040