Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq4364 111 4e-19 seq14526 104 6e-17 seq1635 91.5 3e-13 >seq4364 Length=12272 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || || || | ||||||||| | ||| ||| | || Sbjct 4121 AAAACTCTTACTGGGAAGACTATAACGCTCGAAGTGGAACCTAGTGATACAATTGAGAAT 4062 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 ||||| ||||||||||| || || ||||| || ||| |||||||| || || Sbjct 4061 GTAAAAGCCAAGATTCAAGATAAGGAGGGAATCCCACCAGACCAACAAAGACTGATTTTT 4002 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| ||||| |||||||||||| | ||| | | || |||||| |||| || ||||| Sbjct 4001 GCCGGCAAGCAATTGGAAGATGGACGCACTCTTTCTGACTACAACATCCAAAAGGAGTCC 3942 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || | |||||||||||| | || || Sbjct 3941 ACCTTACACCTTGTTTTGCGTCTCCG 3916 Score = 102 bits (112), Expect = 2e-16 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || || || || ||||| || || | ||||| ||| ||| Sbjct 3677 CAGATCTTCGTCAAGACCCTAACTGGTAAAACTATTACCCTTGAAGTTGAACCCAGTGAT 3618 Query 206233 ACAGTCGAATCAGTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | ||| ||||| || ||| |||||||| || ||||||||| || || || Sbjct 3617 TCAATTGAAAATGTAAAAGCGAAA-ATTCAAGATAAGGAAGGAATTCCTCCAGATCAGCA 3559 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | ||||| |||||||| || || || || ||||| | |||||| | |||||||| | Sbjct 3558 ACGTCTTATATTCGCCGGTAAACAATTAGAGGATGGCCGCACTTTGTCTGATTACAATAT 3499 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 || ||||||||||| |||||| | ||| | ||||| || Sbjct 3498 ACAAAAAGAGTCTACGCTTCACTTGGTTCTACGACTTAGA 3459 >seq14526 Length=1284 Score = 104 bits (114), Expect = 6e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAA-ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGA 206231 ||||| ||| | ||| || || || || || || || || | ||||||||| | ||| Sbjct 932 CAGAT-TTTCGTAAAGACTCTTACTGGGAAGACTATAACACTTGAAGTGGAACCTAGTGA 874 Query 206232 CACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | || ||||| ||||||||||| || || ||||| || ||| || Sbjct 873 TACGATTGAGAATGTAAAAGCCAAGATTCAAGATAAGGAGGGAATCCCACCAGACCAACA 814 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 |||||| || || ||||| ||||| |||||||||||| | ||| | | || |||||| | Sbjct 813 AAGACTGATTTTTGCCGGCAAGCAATTGGAAGATGGACGCACTCTTTCTGACTACAACAT 754 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||| || ||||| || | |||||||||||| | || || Sbjct 753 CCAAAAGGAGTCCACCTTACACCTTGTTTTGCGTCTCCG 715 Score = 102 bits (112), Expect = 2e-16 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || || || || ||||| || || | ||||| ||| ||| Sbjct 1160 CAGATCTTCGTCAAGACCCTAACTGGTAAAACTATTACCCTTGAAGTTGAACCCAGTGAT 1101 Query 206233 ACAGTCGAATCAGTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | ||| ||||| || ||| |||||||| || ||||||||| || || || Sbjct 1100 TCAATTGAAAATGTAAAAGCGAAA-ATTCAAGATAAGGAAGGAATTCCTCCAGATCAGCA 1042 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | ||||| |||||||| || || || || ||||| | |||||| | |||||||| | Sbjct 1041 ACGTCTTATATTCGCCGGTAAACAATTAGAGGATGGCCGCACTTTGTCTGATTACAATAT 982 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 || ||||||||||| |||||| | ||| | ||||| || Sbjct 981 ACAAAAAGAGTCTACGCTTCACTTGGTTCTACGACTTAGA 942 >seq1635 Length=24574 Score = 91.5 bits (100), Expect = 3e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 ||||| || |||||||| || ||||||| ||| ||||||| | ||| | ||| |||||| Sbjct 5580 ACAAGATGGAGAGTAGATTCCTTCTGGATATTGTAGTCAGATAGAGTACGTCCGTCTTCC 5639 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||||| || ||||| || || ||||||||| Sbjct 5640 AGCTGCTTACCAGCGAAAATGAGTCGTTGTTGA 5672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181575316615252