Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq4364 107 2e-18 seq1486 104 2e-17 seq14526 95.1 1e-14 >seq4364 Length=12272 Score = 107 bits (118), Expect = 2e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| | ||| | || | ||||| | | || || ||||| || |||||||| | ||| Sbjct 7049 ACGAAGGCGAAGCACAAGATGTAGGGTGGATTCCTTTTGGATATTGTAGTCCGAGAGGGT 6990 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| |||||| ||||| || || | | |||| ||||||||||| ||||| || ||||| Sbjct 6989 ACGACCATCTTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCTGGGGGAATGCC 6930 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || ||| || || | | || | ||||| | ||||| ||||| | Sbjct 6929 TTCCTTGTCTTGAATCTTAGCCTTAACATTCTCTATGGTATCACTGGGCTCGACTTCAAG 6870 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||||||||||| ||||| || | ||||||||||| Sbjct 6869 TGTAATGGTTTTACCAGTGAGAGTCTTCACAAAAATCTGCAT 6828 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||||||| | |||| | | ||||| ||||| ||||||||||| | || || | Sbjct 3922 CGCAAAACAAGGTGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTGCGTCCA 3981 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | || || |||| | | || || | ||||| ||||| || || || || ||| Sbjct 3982 TCTTCCAATTGCTTGCCGGCAAAAATCAGTCTTTGTTGGTCTGGTGGGATTCCCTCCTTA 4041 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| || ||| | | || | ||||| | || |||||||||| ||| | Sbjct 4042 TCTTGAATCTTGGCTTTTACATTCTCAATTGTATCACTAGGTTCCACTTCGAGCGTTATA 4101 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || ||||| |||||||||| ||||||||||||| Sbjct 4102 GTCTTCCCAGTAAGAGTTTTTACGAAAATCTGCATG 4137 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 |||||| || | | ||||||||||| || ||||| || || || || ||| || Sbjct 3471 AACCAAGTGAAGCGTAGACTCTTTTTGTATATTGTAATCAGACAAAGTGCGGCCATCCTC 3530 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 | |||||||||| | || ||||| || ||||||||||| || ||||| ||||| Sbjct 3531 TAATTGTTTACCGGCGAATATAAGACGTTGCTGATCTGGAGGAATTCCTTCCTTATCTTG 3590 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 |||||| ||| | | ||| | | ||| | || || ||||| | || | ||||| Sbjct 3591 AATTTTCGCTTTTACATTTTCAATTGAATCACTGGGTTCAACTTCAAGGGTAATAGTTTT 3650 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||| || || || | ||| |||||||| Sbjct 3651 ACCAGTTAGGGTCTTGACGAAGATCTGCAT 3680 >seq1486 Length=25894 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 || || |||||||| | | | || || || || ||||||||||| | ||||| | Sbjct 18499 CGTAACACCAAATGAAGGGTAGATTCCTTCTGGATGTTGTAGTCCGATAGAGTACGGCCA 18440 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| |||||||| || | | |||| | ||| |||||||||||||| || ||||| ||| Sbjct 18439 TCTTCTAGCTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTA 18380 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || |||||| |||| | ||| | | ||| | || || ||||| | || | Sbjct 18379 TCCTGAATTTTGGCCTTCACATTTTCGATGGAATCTGAAGGTTCAACTTCAAGAGTGATA 18320 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| ||||| | ||| || | || |||||||| Sbjct 18319 GTTTTGCCAGTTAAAGTCTTAACAAAGATCTGCAT 18285 >seq14526 Length=1284 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 |||||| || | | ||||||||||| || ||||| || || || || ||| || Sbjct 954 AACCAAGTGAAGCGTAGACTCTTTTTGTATATTGTAATCAGACAAAGTGCGGCCATCCTC 1013 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 | |||||||||| | || ||||| || ||||||||||| || ||||| ||||| Sbjct 1014 TAATTGTTTACCGGCGAATATAAGACGTTGCTGATCTGGAGGAATTCCTTCCTTATCTTG 1073 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 |||||| ||| | | ||| | | ||| | || || ||||| | || | ||||| Sbjct 1074 AATTTTCGCTTTTACATTTTCAATTGAATCACTGGGTTCAACTTCAAGGGTAATAGTTTT 1133 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||| || || || | ||| |||||||| Sbjct 1134 ACCAGTTAGGGTCTTGACGAAGATCTGCAT 1163 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||||||| | |||| | | ||||| ||||| ||||||||||| | || || | Sbjct 721 CGCAAAACAAGGTGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTGCGTCCA 780 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | || || |||| | | || || | ||||| ||||| || || || || ||| Sbjct 781 TCTTCCAATTGCTTGCCGGCAAAAATCAGTCTTTGTTGGTCTGGTGGGATTCCCTCCTTA 840 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| || ||| | | || | ||||| | || |||||||| | || | Sbjct 841 TCTTGAATCTTGGCTTTTACATTCTCAATCGTATCACTAGGTTCCACTTCAAGTGTTATA 900 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || ||||| ||||| |||| |||||||||||| Sbjct 901 GTCTTCCCAGTAAGAGTCTTTACGAAAATCTGCAT 935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476514614740320