Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq2 170 3e-36 seq1652 102 1e-15 >seq2 Length=118199 Score = 170 bits (188), Expect = 3e-36 Identities = 388/572 (68%), Gaps = 20/572 (3%) Strand=Plus/Minus Query 1455746 TTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGC 1455805 ||||| || | ||||||| ||||| |||||||| | ||| || ||||| | ||| Sbjct 63766 TTTGTTGTGATGCCCATCCAATACCACGATATATGGGAGTTCTAC-AAGAAGGCAGTGGC 63708 Query 1455806 CTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCC-GA---CACGGTCCACTGGGTGT 1455861 ||||| ||||||| |||||||| ||| | | || || ||| | |||||| | Sbjct 63707 TTCCTTCTGGACCGTGGAGGAGGTTGACTT-GACGAAAGATCTCACTG---ACTGGGAGA 63652 Query 1455862 CGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGC 1455921 |||| || | ||||| || || ||| ||||| || || ||| ||||| ||||| Sbjct 63651 GACTGAATGATGGTGAGCGTCACTTTATCTCCCACGTGCTGGC-TTTCTTCGCAGCCAGT 63593 Query 1455922 GATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAG 1455981 || || || ||| |||||| || | ||| ||||||| ||| | || || Sbjct 63592 GACGGAATTGTGAACGAGAATTTGTGCATGAACTTCTGCCAAGAGGTTCAAATTCCGGAA 63533 Query 1455982 GCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCG 1456041 || |||| || || ||| | || || || | || ||||||||||| || | || || Sbjct 63532 GCTCGTTGTTTCTATGGGATGCAAATTGCAGTAGAGAACATCCACTCGGAGATGTATTCA 63473 Query 1456042 CTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATC 1456101 || || ||||| |||||||| || || |||| | || || ||||| || || Sbjct 63472 CTGCTCATCGATACCTACGTGAAAGAGCCGGCCAAGCGTGATTTTCTCTTCAATGCGATT 63413 Query 1456102 GACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATC---AACAAG 1456158 || || |||| | |||| ||| ||||| || ||||| ||| ||||||| ||||| Sbjct 63412 GAGACTCTGCCATGTGTGAAGAAGAAGGCGGATTGGGCACTGAGGTGGATCGCGAACAAA 63353 Query 1456159 GAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTT 1456217 || | |||| | ||| ||||| | | | ||||| || || ||||| | || | Sbjct 63352 GA----CGCGAC-GTATGCGGAGCGTGTTATGGCGTTTGCTGCAGTGGAGGGGGTTTTCT 63298 Query 1456218 TCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTC 1456277 ||||||| ||| | | ||||| ||| | |||||||| ||||| ||||| |||| || Sbjct 63297 TCTCGGGTTCATTCGCCTCGATCTTCTGGTTGAAGAAGCGTGGCCTAATGCCGGGTC-TC 63239 Query 1456278 TGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309 ||| || ||||| || || || || ||||| Sbjct 63238 ACCTTCAGTAACGAGTTGATTAGCCGTGACGA 63207 >seq1652 Length=24454 Score = 102 bits (112), Expect = 1e-15 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 ||| | ||||| ||||||||||| || || || ||||| |||| || || | | | ||| Sbjct 17879 AAGGCTATGTCTATCATGAACTCTTTCGTTAATGACATCTTCGAACGTATTGCCGCAGAG 17820 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084 | || | ||||| | || ||||||| || ||| || |||||||||||||| Sbjct 17819 TCAAGTAGGCTGGCCCACTACAACAAGAAATCAACTATCACCAGCCGCGAGATCCAGACT 17760 Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || ||||| ||| || | | ||| ||| |||| | ||| |||||||| || ||||| Sbjct 17759 GCTGTGCGTCTGCTCTTACCCGGTGAATTGGCTAAGCATGCCGTCTCAGAAGGCAC 17704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176247522802344