Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq1635 95.1 1e-14 seq1486 89.7 5e-13 >seq1635 Length=24574 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||| | ||| | ||| ||||| || || ||||| || | Sbjct 5562 CCACCACGAAGACGAAGCACAAGATGGAGAGTAGATTCCTTCTGGATATTGTAGTCAGAT 5621 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| |||||||||||||| || || || | || || || || | || Sbjct 5622 AGAGTACGTCCGTCTTCCAGCTGCTTACCAGCGAAAATGAGTCGTTGTTGATCTGGGGGG 5681 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||||| ||||| ||||| | | | | |||||| |||| || ||| Sbjct 5682 ATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTCTCAATCGTGTCACTCGGCTCAACC 5741 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | || || |||||||| || | || |||||||| || ||||| Sbjct 5742 TCGAGAGTTATTGTTTTACCGGTGAGGGTCTTCACAAAAATTTGCAT 5788 >seq1486 Length=25894 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | ||||||||||| | ||| ||||| || |||||||| || | Sbjct 18511 CCACCACGAAGACGTAACACCAAATGAAGGGTAGATTCCTTCTGGATGTTGTAGTCCGAT 18452 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || || ||||| || || ||||| ||||| || || || || | |||| Sbjct 18451 AGAGTACGGCCATCTTCTAGCTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAGGA 18392 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | ||||| ||| ||| ||| | ||||| | || | | | || | ||| || Sbjct 18391 ATACCTTCCTTATCC-TGAATTTTGGCCTTCACATTTTCGATGGAATCTGAAGGTTCAAC 18333 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| ||||| || || ||||| || ||||| |||||||| Sbjct 18332 TTCAAGAGTGATAGTTTTGCCAGTTAAAGTCTTAACAAAGATCTGCAT 18285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450702246676960