Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq1977 105 1e-17 >seq1977 Length=22071 Score = 105 bits (116), Expect = 1e-17 Identities = 199/288 (69%), Gaps = 6/288 (2%) Strand=Plus/Plus Query 161408 GCTAAACTCTATGGATATTGGATTGTAAAGAACTACAGAGAGAGTTATGGGATGCACGCC 161467 ||||| ||||||| ||||||||||| || || | || || ||| ||| |||| Sbjct 2451 GCTAAGCTCTATGCCTATTGGATTGTTGTAAATTATCGGGAAAGCTATAACATGTTCGCC 2510 Query 161468 AGTAGTGGTATTCTATTCAACCATGAGTCACCACGACGGGGTGAGACTTTCGTAACCCGT 161527 ||| ||||||||| || || || ||| ||||| | || |||||||| || ||||| Sbjct 2511 TGTAATGGTATTCTCTTTAATCACGAGAGCCCACGCAGAGGAGAGACTTTTGTCACCCGC 2570 Query 161528 AAGATTACTAGGGGACTATCCCGTATTAGTACAGGACTA-CAGGA--TTGTCTATACCTA 161584 || || || | | | | | || |||| ||| | | | ||||| ||||| | || Sbjct 2571 AAAATCACCCGTGCAGTCGCTCGAATTA-AACACGGCAAGCAGGAAGTTGTC--GAACTT 2627 Query 161585 GGTAATCTAAACTCAAGACGAGATTGGGGTCATGCTGAAGACTATGTGGAGGCTATGTGG 161644 ||||||||||| | ||| |||||||| |||||| ||| ||||| | || |||||| Sbjct 2628 GGTAATCTAAATGCCGAACGTGATTGGGGCTATGCTGGAGATTATGTTTATGCAATGTGG 2687 Query 161645 TTGATGTTACAACAGGAAACTCCTGATGACTATGTGATTGCCACAGGT 161692 | ||| |||| || || |||| |||| | |||||| | ||| Sbjct 2688 CTTATGCTACAGCAAGACGAGCCTGTTGACCTAATAATTGCCTCTGGT 2735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729781679766560