Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1443 251 1e-61 >seq1443 Length=26160 Score = 251 bits (278), Expect = 1e-61 Identities = 439/636 (69%), Gaps = 2/636 (0%) Strand=Plus/Plus Query 69489 CTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCC 69548 |||||| ||||| | | ||| ||| |||||| || ||||||||| || ||| || Sbjct 13538 CTCTTTCTCATACTTCGAATAGAGCGCTTCGAACTCCTCTCCCCAACAGTCTGCCAGACC 13597 Query 69549 AGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAA 69608 || ||||| | ||| ||| || | ||||| |||||||| | ||| | | ||| || Sbjct 13598 GGGGCATTCGTGAGGATCCATGAAAGTCCACATCTCATCATCATGAACCCTCTGCATGAA 13657 Query 69609 TAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGT 69668 ||||| |||||||| ||||| | ||||||||||| | | | | || || || || Sbjct 13658 AAGATCAGGAATCCAGAGAGCCAGGAAGAGATCTCTAGCACGAATCTCCTCGGCCCCAGT 13717 Query 69669 AttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGC 69728 ||| | || || | |||| || | ||||| |||||| |||||||||||||| || Sbjct 13718 GTTTCTACGCAGCTCTATGAACTGCAAGACATCAGGATGCCAGGGTTCTAGATATATAGC 13777 Query 69729 CATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGAC 69788 | | || || || ||||| || || || || | || || || ||| |||| || || Sbjct 13778 AAAAGCACCGGGACGCTTATTCCCACCTTGGTCCACATACCTAGCGGTGCTATTGTACAC 13837 Query 69789 TCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCT 69848 || |||||| |||| | ||||| |||| |||||| ||||| | ||| || | || || Sbjct 13838 TCGCAGCATGGGAACCAAGCCATTGGATTCACCATTGGTTCCGGCGATAAAAGTGCC-CT 13896 Query 69849 TGCG-CGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCAC 69907 ||| |||||| | | | ||||| | ||||| || | || ||||| | |||| Sbjct 13897 TGCTACGAATACAATGCACATTAAGACCAACGCCTCCAGCGTTCTTTGAGATCAAGGCAC 13956 Query 69908 AACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAAC 69967 | | || | ||| || || |||||||| || || || || |||| | ||||| |||| Sbjct 13957 ATTGCTTGAGTGTATCGTAGATACCCTCGATACTGTCGTCCTTCATCGTGAGAAGGAAAC 14016 Query 69968 AGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGA 70027 |||| ||||| ||| || | || |||| ||| || | || ||||| || ||||||| Sbjct 14017 AGCTCGACATCTGAGGAACTGGTGTGCCCGAATTGAAGAGAGTCGGAGAGGCCTGAGTGA 14076 Query 70028 ACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAA 70087 |||| |||| ||| | || | || || |||| || | ||| | ||| | || | Sbjct 14077 ACCACTTTTGAGACATTAGGTGATACGTCTCAAAGGCAGCTTCGAGATCATATCCGTGGA 14136 Query 70088 TTCCTATCGCGACACGCATCAACATATGCTGAGGTC 70123 | || | | || ||||| ||||||||||| |||| Sbjct 14137 TGCCCAAGGACACGCGCATAAACATATGCTGCGGTC 14172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686769597931680