Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1635 100 2e-16 seq14526 95.1 1e-14 seq4364 93.3 4e-14 >seq1635 Length=24574 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || || || ||||||||||| | | || ||||||| ||||| ||||| Sbjct 5592 GTAGATTCCTTCTGGATATTGTAGTCAGATAGAGTACGTCCGTCTTCCAGCTGCTTACCA 5651 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| ||||||| || |||||||| || || | ||||| || || ||||| ||| Sbjct 5652 GCGAAAATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTC 5711 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | | ||||| || |||||||| | ||| || || || || Sbjct 5712 ACATTCTCAATCGTGTCACTCGGCTCAACCTCGAGAGTTATTGTTTTACCGGTGAGGGTC 5771 Query 27231 TTCACAAAGATTTGCATA 27248 |||||||| ||||||||| Sbjct 5772 TTCACAAAAATTTGCATA 5789 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || ||||||||||| | ||||| | ||||| |||||||| || Sbjct 15471 GTTGATTCCTTCTGGATATTGTAGTCAGAAAGAGTGCGCCCCTCTTCCAGCTGTTTGCCA 15412 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| ||||||| || |||||||| || || | ||||| || || ||||| ||| Sbjct 15411 GCGAAAATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTC 15352 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | | ||||| || ||||| || | ||| || || || || Sbjct 15351 ACATTCTCAATCGTGTCACTCGGCTCAACCTCGAGAGTAATTGTTTTTCCAGTGAGGGTC 15292 Query 27231 TTCACAAAGATTTGCATA 27248 |||||||| ||||||||| Sbjct 15291 TTCACAAAAATTTGCATA 15274 >seq14526 Length=1284 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || ||||||||||| | | | || ||||||| ||||| || || Sbjct 511 GTTGATTCCTTCTGGATATTGTAGTCATTAAGAGTACGTCCGTCTTCCAGCTGCTTGCCA 570 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| ||||||| || |||||||| || || | ||||| || || ||||| |||| Sbjct 571 GCGAAAATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTTGTCCTGAATCTTCGCTTTC 630 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | |||| | ||| | | ||||| || ||||| || | ||| || || || || Sbjct 631 ACATTCTCTATCGAGTCACTCGGCTCAACCTCGAGAGTAATTGTTTTACCGGTGAGGGTC 690 Query 27231 TTCACAAAGATTTGCAT 27247 |||||||| |||||||| Sbjct 691 TTCACAAAAATTTGCAT 707 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | |||||| |||||||| |||||||| || || |||| | || || Sbjct 955 ACCAAGTGAAGCGTAGACTCTTTTTGTATATTGTAATCAGACAAAGTGCGGCCATCCTCT 1014 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 | |||||||||||| | || ||||| || ||||| || || | || || ||||| Sbjct 1015 AATTGTTTACCGGCGAATATAAGACGTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGA 1074 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 || || ||| | |||| | | || ||| ||||||||| || || |||| ||| Sbjct 1075 ATTTTCGCTTTTACATTTTCAATTGAATCACTGGGTTCAACTTCAAGGGTAATAGTTTTA 1134 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || || || ||||| ||||| Sbjct 1135 CCAGTTAGGGTCTTGACGAAGATCTGCAT 1163 >seq4364 Length=12272 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | |||||| |||||||| |||||||| || || |||| | || || Sbjct 3472 ACCAAGTGAAGCGTAGACTCTTTTTGTATATTGTAATCAGACAAAGTGCGGCCATCCTCT 3531 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 | |||||||||||| | || ||||| || ||||| || || | || || ||||| Sbjct 3532 AATTGTTTACCGGCGAATATAAGACGTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGA 3591 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 || || ||| | |||| | | || ||| ||||||||| || || |||| ||| Sbjct 3592 ATTTTCGCTTTTACATTTTCAATTGAATCACTGGGTTCAACTTCAAGGGTAATAGTTTTA 3651 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || || || ||||| ||||| Sbjct 3652 CCAGTTAGGGTCTTGACGAAGATCTGCAT 3680 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 27044 ATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTG 27103 ||||| ||||| || || || ||||||||||| | | || ||||||| | ||| Sbjct 3705 ATGTAGAGTAGATTCCTTCTGGATATTGTAGTCAGATAGAGTACGTCCGTCTTCCAACTG 3764 Query 27104 TTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTT 27163 || || ||| ||||||| || |||||||| || || | ||||| || || ||||| Sbjct 3765 CTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTTGTCCTGAATCTT 3824 Query 27164 GTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGT 27223 ||||| | |||| | ||| | | ||||| || ||||| || | ||| || || Sbjct 3825 CGCTTTCACATTCTCTATCGAGTCACTCGGCTCAACCTCGAGAGTAATTGTTTTACCGGT 3884 Query 27224 CAGAGTTTTCACAAAGATTTGCAT 27247 || || |||||||| |||||||| Sbjct 3885 GAGGGTCTTCACAAAAATTTGCAT 3908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424850439867744