Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1443 125 9e-24 seq4319 104 3e-17 seq2 91.5 2e-13 >seq1443 Length=26160 Score = 125 bits (138), Expect = 9e-24 Identities = 413/639 (65%), Gaps = 5/639 (1%) Strand=Plus/Plus Query 111449 CGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAG 111508 || ||||| ||| ||||| | ||||| ||||| |||||||| ||| ||| | Sbjct 13533 CGACCCTCTTTCTCATACTTCGAATAGAGCGCTTCGAACTCCTCTCCCCAACAGTCTGCC 13592 Query 111509 AGACCTGGTGCCTT-GTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTT 111567 ||||| || || || || ||| | | || ||| || | || | ||||| || Sbjct 13593 AGACCGGG-GCATTCGTGAGGATCCATGAAAGTCCACATCTCATCATCATGAACCCTCTG 13651 Query 111568 CATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTC 111627 ||||||||| || |||||||| || | |||||||||||| ||| ||| ||| | Sbjct 13652 CATGAAAAGATCAGGAATCCAGAGAGCCAGGAAGAGATCTCTAGCACGAATCTCCTCGGC 13711 Query 111628 ACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATA 111687 || ||| || | ||| | ||||| || || ||| | ||||| || || ||||| Sbjct 13712 CCCAGTGTTTCTACGCAGCTCTATGAACTGCAAGACATCAGGATGCCAGGGTTCTAGATA 13771 Query 111688 GACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTT 111744 | || | || || || | |||| |||| | ||||| | || ||| || Sbjct 13772 TATAGCAAAAGCACCGGGACGCTTATTCCCACCTTGGTCCACATACCTAGCGGTGCTATT 13831 Query 111745 AAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGA 111804 | || || ||||| |||| | |||| |||| |||||| || || ||| || Sbjct 13832 GTACACTCGCAGCATGGGAACCAAGCCATTGGATTCACCATTGGTTCCGGCGATAAAAGT 13891 Query 111805 TTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTG 111864 ||| | | | ||| | | | |||| || ||||| ||||||||| Sbjct 13892 GCCCTTGCTACGAATACAATGCACATTAAGACCAACGCCTCCAGCGTTCTTTGAGATCAA 13951 Query 111865 CGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAG 111924 ||||| | | | || || | |||||||| | ||| ||| ||||| | | || ||| Sbjct 13952 GGCACATTGCTTGAGTGTATCGTAGATACCCTCGATACTGTCGTCCTTCATCGTGAGAAG 14011 Query 111925 GAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTG 111984 ||| || || |||||||| || |||||| || | ||||||||| || || | || || Sbjct 14012 GAAACAGCTCGACATCTGAGGAACTGGTGTGCCCGAATTGAAGAGAGTCGGAGAGGCCTG 14071 Query 111985 AATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCC 112044 | ||||| ||| ||||| || || ||||| ||| ||| || | || | || Sbjct 14072 AGTGAACCACTTTTGAGACATTAGGTGATACGTCTCAAAGGCAGCTTCGAGATCATATCC 14131 Query 112045 GTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 ||||||||| | | || ||||| ||||| | ||| || Sbjct 14132 GTGGATGCCCAAGGACACGCGCATAAACATATGCTGCGG 14170 >seq4319 Length=12421 Score = 104 bits (114), Expect = 3e-17 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 182695 ATTTACCGCGAAGTGGGAACACACCGTAGTGATCACGACCAACGACAGAGAGACCCGCAA 182754 ||||||| | ||| || ||||| || |||||||||| || || |||||||| || | Sbjct 9719 ATTTACCCTTCAATGGAAAGACACCATATCGATCACGACCGACCACTGAGAGACCAGCCA 9778 Query 182755 CCGCGAGGGTTTTCGCCGAATCACCCTCCGTGACAATGAGAGTACACTTTCCAGATTGTG 182814 |||| | |||||| || ||||| ||||| |||| |||||||||||| || || | Sbjct 9779 CCGCTAAGGTTTTGGCTGAATCTCCCTCGGTGAGAATGAGAGTACAATTAATTGAATTCT 9838 Query 182815 CCGTACCCGCCTTGTTCGCGTCATCCAACTTGGGAATACC 182854 || ||||| | ||| || ||||||| ||| || ||||| Sbjct 9839 TTGTTCCCGCGTCGTTGGCATCATCCAGCTTCGGGATACC 9878 >seq2 Length=118199 Score = 91.5 bits (100), Expect = 2e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| |||||||| || ||| ||| | || || |||| ||||| ||||| || || Sbjct 63197 GTGCAGACCCTCGTCACGGCTAATCAACTCGTTACTGAAGGTGAGACCCGGCATTAGGCC 63256 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||||||||| | || | | |||||| || |||||||| | |||||||| Sbjct 63257 ACGCTTCTTCAACCAGAAGATCGAGGCGAATGAACCCGAGAAGAAAACCCCCTCCACTGC 63316 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG-CATCAAACCATTTCATTG 122848 |||||||| | || || || || | | || | ||||| | | ||| ||| || Sbjct 63317 AGCAAACGCCATAACACGCTCCGCATACG-TCGCGTCTTTGTTCGCGATCCACCTCAGTG 63375 Query 122849 CCCATTTCGCCTTCTTCTCAATACATGGTACAGT 122882 |||| | ||||||||||| | |||||| | ||| Sbjct 63376 CCCAATCCGCCTTCTTCTTCACACATGGCAGAGT 63409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627904729315200