Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1443 145 9e-30 seq2 91.5 2e-13 >seq1443 Length=26160 Score = 145 bits (160), Expect = 9e-30 Identities = 422/641 (66%), Gaps = 9/641 (1%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| | ||||| ||||||||| || | || || || || | || | || ||| | Sbjct 14170 CCGCAGCATATGTTTATGCGCGTGTCCTTGGGCATCCACGGATATGATCTCGAAGCTGCC 14111 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 104341 || ||||| || || ||||| ||| ||||| ||| || | || || |||||| Sbjct 14110 TTTGAGACGTATCACCTAATGTCTCAAAAGTGGTTCACTCAGGCCTCTCCGACTCTCTTC 14051 Query 104342 AATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 104401 ||| | || |||||| || || ||||| || || |||||| || | | ||||| ||| Sbjct 14050 AATTCGGGCACACCAGTTCCTCAGATGTCGAGCTGTTTCCTTCTCACGATGAAGGACGAC 13991 Query 104402 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 104461 ||| | |||||||| | || || | | | ||||| ||||||||| ||||| Sbjct 13990 AGTATCGAGGGTATCTACGATACACTCAAGCAATGTGCCTTGATCTCAAAGAACGCTGGA 13931 Query 104462 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAAT 104521 || |||| | | | ||| | | | ||| || ||| || || ||| Sbjct 13930 GGCGTTGGTCTTAATGTGCATTGTATTCGTAGCAAGGGCACTTTTATCGCCGGAACCAAT 13871 Query 104522 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 104581 ||| |||| |||| | |||| ||||| || || | || ||| || | ||||| Sbjct 13870 GGTGAATCCAATGGCTTGGTTCCCATGCTGCGAGTGTACAATAGCACCGCTAGGTATGTG 13811 Query 104582 AATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCG 104638 | |||| |||| | || || || | || | ||||| || || ||||| | Sbjct 13810 GACCAAGGTGGGAATAAGCGTCCCGGTGCTTTTGCTATATATCTAGAACCCTGGCATCCT 13751 Query 104639 GATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCC-G 104697 ||| || || ||||| | ||| ||||| ||| || | ||||||| || ||| | Sbjct 13750 GATGTCTTGCAGTTCATAGAGCTGCGTAGAAACACTGGGGCCGAGGAGATTCG-TGCTAG 13692 Query 104698 CGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGG 104757 ||||||||| |||||||||||||| ||||| |||||| |||| ||| | || || Sbjct 13691 AGATCTCTTCCTGGCTCTCTGGATTCCTGATCTTTTCATGCAGAGGGTTCATGATGATGA 13632 Query 104758 CAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCTGGTCTCTCCGA-TGCCGTGGGTGAG 104815 | ||| || || | ||| || || || || ||||| | || || | ||| ||| Sbjct 13631 GATGTGGACTTTCATGGATCCTCACGAATGC-CCCGGTCTGGCAGACTGTTG-GGGAGAG 13574 Query 104816 GAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCG 104856 ||||| ||||| || || | ||||| ||| |||| ||||| Sbjct 13573 GAGTTCGAAGCGCTCTATTCGAAGTATGAGAAAGAGGGTCG 13533 Score = 89.7 bits (98), Expect = 6e-13 Identities = 165/235 (70%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 105713 GGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAGTTGTACCGCACAGTT 105772 ||||| ||||| | || | | |||||| | || |||||| ||||||| || || Sbjct 12425 GGTTCTATTCAGCACATCGACGGCATTCCAGACGATATTAAGGCGTTGTACAAGACTGTC 12366 Query 105773 TGGGAAAT--CA-AGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATT 105829 ||||| || || ||| || ||| ||||| | || |||||||||| || ||||| Sbjct 12365 TGGGAGATTCCACAGAA-AACGATT--ATTGATCTAGCTGCAGATCGTGCTCCTTTCATA 12309 Query 105830 GATCAAAGTCAAAGTATGAATCTCTTCATGGAA-AGTCCAACGATGTCCAAGCTCTCTTC 105888 ||||| ||||| |||||||| |||| | | ||||| ||| ||| || |||| Sbjct 12308 GATCAGAGTCAGTCGTTGAATCTCCACATGAAGGAACCCAACTATGGT-AAGATCACTTC 12250 Query 105889 TATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTACCTCCGA 105943 ||||| | || ||||||||||| || || || || ||||| ||||||||| Sbjct 12249 CATGCATTTCTATGCGTGGAAGAAGGGACTGAAGACTGGAATGTACTACCTCCGA 12195 >seq2 Length=118199 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 94750 AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATA-CAAAGTCGCGTTCCTTTGCTGAGCG 94808 ||||| ||||||||||| ||| |||| | | | ||||| |||| | | ||| ||||| Sbjct 63391 AAGAAGGCGGATTGGGCACTGAGGTGGATCGCGAACAAAGACGCGA-CGTATGCGGAGCG 63333 Query 94809 ACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTA 94868 | | || ||||| || ||||| | |||||||| ||||| ||| | | || | Sbjct 63332 TGTTATGGCGTTTGCTGCAGTGGAGGGGGTTTTCTTCTCGGGTTCATTCGCCTCGATCTT 63273 Query 94869 TTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCG 94928 ||| | |||||||| || || ||||| |||||| |||| |||||| | || || Sbjct 63272 CTGGTTGAAGAAGCGTGGCCTAATGCCGGGTCTCACCTTCAGTAACGAGTTGATTAGCCG 63213 Query 94929 TGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||||||| || ||| ||| || || Sbjct 63212 TGACGAGGGTCTGCACACAGATTTCGC 63186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583142602198880