Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1443 147 2e-30 >seq1443 Length=26160 Score = 147 bits (162), Expect = 2e-30 Identities = 404/608 (66%), Gaps = 12/608 (2%) Strand=Plus/Plus Query 79305 CTCCCCATAGACA-TCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCT 79363 ||||||| ||| || | ||| || ||||| ||||| || ||| | ||| || Sbjct 13576 CTCCCCA---ACAGTCTGCCAGACCGGGGCATTCGTGAGGATCCATGAAAGTCCACATCT 13632 Query 79364 CGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGC 79423 | || | | |||| ||| |||||| || || || ||||| || ||| |||||| || | Sbjct 13633 CATCATCATGAACCCTCTGCATGAAAAGATCAGGAATCCAGAGAGCCAGGAAGAGATCTC 13692 Query 79424 GGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGG 79483 ||| ||||||||| | || ||| ||||||||| | || | || || || | Sbjct 13693 TAGCACGAATCTCCTCGGCCCCAGTGTTTCTACGCAGCTCTATGAACTGCAAGACATCAG 13752 Query 79484 CGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGA 79543 ||||| || || ||||| || || || | ||| ||||| || || |||| | Sbjct 13753 GATGCCAGGGTTCTAGATATATAGCAAAAGCACCGGGACGCTTATTCCCACCTTGGTCCA 13812 Query 79544 CGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGT 79603 | |||| || ||| | ||| | ||||| |||||||| || | ||| | || | || | Sbjct 13813 CATACCTAGCGGTGCTATTGTACACTCGCAGCATGGGAACCAAGCCATTGGATTCACCAT 13872 Query 79604 TCGTCCCGTTGATTCGTGTACCGCTCGCC-CGAATGTTCGA-GCAG-TGGATTCCGATGC 79660 | || ||| ||| || || || || ||||| | | ||| | | || | || Sbjct 13873 TGGTTCCGGCGATAAAAGTGCC-CTTGCTACGAATA--CAATGCACATTAAGACCAACGC 13929 Query 79661 CCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCG 79720 | || | ||| ||||| || || | |||||| || |||||||| |||||||| Sbjct 13930 CTCCAGCGTTCTTTGAGATCAAGGCACATTGCTTGAGTGTATCGTAGATACCCTCGATAC 13989 Query 79721 AGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGG-GTTGTTCGTACCGGCG 79779 |||||||||||| | || ||||| |||||||||||||| || || | || || | Sbjct 13990 TGTCGTCCTTCATCGTGAGAAGGAAACAGCTCGACATCTGAGGAACTGGT-GTGCCCGAA 14048 Query 79780 TTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCC 79839 |||||||| ||||| | || || ||||| ||||||| ||| || | |||||||| Sbjct 14049 TTGAAGAGAGTCGGAGAGGCCTGAGTGAACCACTTTTGAGACATTAGGTGATACGTCTCA 14108 Query 79840 TTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAAGAGGTACTGG 79899 | | ||| || | ||||||||||| | | |||||||| || | | ||| Sbjct 14109 AAGGCAGCTTCGAGATCATATCCGTGGATGCCCAAGGACACGCGCATAAACATATGCTGC 14168 Query 79900 GGCGTCTC 79907 || |||| Sbjct 14169 GGTCTCTC 14176 Score = 102 bits (112), Expect = 9e-17 Identities = 307/468 (66%), Gaps = 6/468 (1%) Strand=Plus/Minus Query 19166 GAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAAC 19225 ||||| || |||| ||| || |||| ||||| || || | ||||| || ||||| Sbjct 14107 GAGACGTATCACCTAATGTCTCAAAAGTGGTTCACTCAGGCCTCTCCGACTCTCTTCAAT 14048 Query 19226 GCCGGTACGAACAAC-CCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAG 19284 | || || | || || |||||||||||||||||||| | | |||||||| ||||| Sbjct 14047 TCGGGCAC-ACCAGTTCCTCAGATGTCGAGCTGTTTCCTTCTCACGATGAAGGACGACAG 13989 Query 19285 CATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGG 19344 || ||||| |||||||| || |||||| | || || ||||| ||| | || || Sbjct 13988 TATCGAGGGTATCTACGATACACTCAAGCAATGTGCCTTGATCTCAAAGAACGCTGGAGG 13929 Query 19345 TATCGGGATCCA-CTGC-TCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAAC 19402 | || | | ||| | | ||| || | || || ||| || || || Sbjct 13928 CGTTGGTCTTAATGTGCATTG--TATTCGTAGCAAGGGCACTTTTATCGCCGGAACCAAT 13871 Query 19403 GGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTC 19462 || | | || | || | || || ||||| || || | ||| | ||| || ||||| || Sbjct 13870 GGTGAATCCAATGGCTTGGTTCCCATGCTGCGAGTGTACAATAGCACCGCTAGGTATGTG 13811 Query 19463 AACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCG 19522 |||| || || || || || | || || || || || || || ||||| | Sbjct 13810 GACCAAGGTGGGAATAAGCGTCCCGGTGCTTTTGCTATATATCTAGAACCCTGGCATCCT 13751 Query 19523 GACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGC 19582 || ||| || | ||| | || ||||| ||| || | ||||||||| || | | Sbjct 13750 GATGTCTTGCAGTTCATAGAGCTGCGTAGAAACACTGGGGCCGAGGAGATTCGTGCTAGA 13691 Query 19583 GACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTT 19630 || |||||| ||| | |||||||| || || |||||| ||| |||| Sbjct 13690 GATCTCTTCCTGGCTCTCTGGATTCCTGATCTTTTCATGCAGAGGGTT 13643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548413641449280