Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1443 143 3e-29 seq4319 98.7 1e-15 >seq1443 Length=26160 Score = 143 bits (158), Expect = 3e-29 Identities = 411/616 (67%), Gaps = 16/616 (3%) Strand=Plus/Minus Query 53174 GAGACGCCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGA-CTACAC 53232 |||| || ||| || | || |||||||| ||||||| |||||||| | || || | Sbjct 14176 GAGAGACCGCAGCATATGTTTATGCGCGTGTCCTTGGGCATCCACGGATATGATCTCGAA 14117 Query 53233 GCGTGTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAAC 53292 || || | ||||||||| || ||||| ||||||| || || || ||| | || || Sbjct 14116 GC-TGCCTTTGAGACGTATCACCTAATGTCTCAAAAGTGGTTCACTCAGGCCTCTCCGAC 14058 Query 53293 CCTGTTCAACGCTGGTACGAATCAC--CCTCAGATGTCGAGCTGCTTCCTGGTGGCGATG 53350 || ||||| | || || | || ||||||||||||||||| ||||| | ||||| Sbjct 14057 TCTCTTCAATTCGGGCAC--ACCAGTTCCTCAGATGTCGAGCTGTTTCCTTCTCACGATG 14000 Query 53351 AAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAG 53410 ||||| ||| ||||| || |||||||| || |||||| | |||||| ||||| ||| Sbjct 13999 AAGGACGACAGTATCGAGGGTATCTACGATACACTCAAGCAATGTGCCTTGATCTCAAAG 13940 Query 53411 TGGTCGGGTGGTATCGGTATCCA-CTGC-TCGAACGTCCGTGCGAACGGCACACCAATCA 53468 | || || | ||| | | ||| | | | | ||| || ||||| ||| Sbjct 13939 AACGCTGGAGGCGTTGGTCTTAATGTGCATTGTA--TTCGTAGCAAGGGCACTTTTATCG 13882 Query 53469 AGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGG 53528 || || || || | || |||| | || || ||||| || || | ||| | ||| | Sbjct 13881 CCGGAACCAATGGTGAATCCAATGGCTTGGTTCCCATGCTGCGAGTGTACAATAGCACCG 13822 Query 53529 CCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGC 53588 | |||| || |||| ||||| ||||| || | || || || || || || | Sbjct 13821 CTAGGTATGTGGACCAAGGTGGGAATAAGCGTCCCGGTGCTTTTGCTATATATCTAGAAC 13762 Query 53589 CGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCA-GGGTGACGAAGAG 53647 | ||||| | || | || |||| | ||||||||| ||| || || | ||| ||| Sbjct 13761 CCTGGCATCCTGATGTCTTGCAGTTCATAGAGCTGCGT-AGAAACACTGGGGCCGAGGAG 13703 Query 53648 ATGCGCTGC-CGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGT 53706 || || ||| | || || || ||||| |||||||| || || |||||||| | ||| Sbjct 13702 ATTCG-TGCTAGAGATCTCTTCCTGGCTCTCTGGATTCCTGATCTTTTCATGCAGAGGGT 13644 Query 53707 GGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCT-CCAGGGTG 53765 | | || ||| |||| | ||| || |||| |||||||| || ||| || Sbjct 13643 TCATGATGATGAGATGTGGACTTTCATGGATCCTCACGAATGCCCCGGTCTGGCAGACTG 13584 Query 53766 TCTACGGTGAGGAGTT 53781 | | || |||||||| Sbjct 13583 T-TGGGGAGAGGAGTT 13569 Score = 93.3 bits (102), Expect = 5e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 55730 AAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCT 55789 |||| | | ||| ||| || ||||||||||||||||| | | ||||| | ||| Sbjct 12386 AAGGCGTTGTACAAGACTGTCTGGGAGATTCCACAGAAAACGATTATTGATCTAGCTGCA 12327 Query 55790 GATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAG-AATCCTTC 55848 ||||||| | | | ||| || ||| ||||| |||| || |||| || || || | Sbjct 12326 GATCGTGCTCCTTTCATAGATCAGAGTCAGTCGTTGAATCTCCACATGAAGGAACCCAAC 12267 Query 55849 ACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTAT 55908 ||| ||| | | || ||||| || || | ||||||||||||||| ||||| || || Sbjct 12266 TATGGT-AAGATCACTTCCATGCATTTCTATGCGTGGAAGAAGGGACTGAAGACTGGAAT 12208 Query 55909 GTACTATCTGCGGACCCG 55926 |||||| || || ||||| Sbjct 12207 GTACTACCTCCGAACCCG 12190 >seq4319 Length=12421 Score = 98.7 bits (108), Expect = 1e-15 Identities = 203/296 (69%), Gaps = 6/296 (2%) Strand=Plus/Plus Query 152007 TCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACC 152066 || ||||| |||||||| |||||||||||| |||| || | ||| || ||||| Sbjct 6967 TCTAGTCAGGGGACTCAACACCGTGAAGATGTAACGGGCAGAAGCGGAATCTTTACCACC 7026 Query 152067 TGCCAGCCGCGTTCCAAACTGTCC-AGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCA 152125 | || || || || ||||| || | ||| | ||||| ||||| || || | || | Sbjct 7027 CGACAATCGAGTACCGAACTGACCGATAGGAAGC-AGGAGATTGAGATTATTAGAACCAA 7085 Query 152126 CGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACG 152185 | |||| |||||||| ||| | ||| || ||| ||| | |||||| |||||||| | Sbjct 7086 CAAAATCCTGAGCCAGATTAATAATAGTTCCCATCAGCGACATTTCACCATGGTGATAGG 7145 Query 152186 CCGTCTGCTCCGCGA-TGTATCCCGC-CAACTGCGCCACCTTCATGTCCGTCGTCAGGTT 152243 | | | || |||| | | |||| ||| || ||||||| || || || | || Sbjct 7146 CGGACATTTCTGCGACAGCA--CCGCACAATTGGTCCACCTTGATTTCTTTCACTTGATT 7203 Query 152244 CTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGTCCACCA 152299 || | |||| | |||| ||||| | |||| |||||| ||||| ||||||| Sbjct 7204 GCGTTTCAAGCAGGTGAAAATGACCTTTCTCTGGCCTGGTTTTAAACCATCCACCA 7259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547105106677600