Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq4364 105 4e-18 seq14526 93.3 3e-14 seq1635 93.3 3e-14 >seq4364 Length=12272 Score = 105 bits (116), Expect = 4e-18 Identities = 158/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||| || | || | ||| ||||||||| ||||| || || ||||| || || Sbjct 3919 AGACGCAAAACAAGGTGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTGCGT 3978 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | ||| || |||||||| || | | |||||||| || || | ||||||| Sbjct 3979 CCATCTTCCAATTGCTTGCCGGCAAAAATCAGTCTTTGTTGGTCTGGTGGGATTCCCTCC 4038 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCT-TCGCTCTCCACTTCCACGGT 34667 || ||| ||||| ||||| |||||| || | | | |||||||| | || Sbjct 4039 TTATCTTGAATCTTGGCTTTTACATTCTCAATTGTATCACTAGGT-TCCACTTCGAGCGT 4097 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 ||| || || || || | ||||| || |||||||||||||| Sbjct 4098 TATAGTCTTCCCAGTAAGAGTTTTTACGAAAATCTGCATGTT 4139 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| || | ||| | ||| || ||| |||||||| || || || || || Sbjct 7054 CCACCACGAAGGCGAAGCACAAGATGTAGGGTGGATTCCTTTTGGATATTGTAGTCCGAG 6995 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | |||||||| || || || ||||| || | |||||||||||| || || Sbjct 6994 AGGGTACGACCATCTTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCTGGGGGA 6935 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| ||| || | ||||| | || || || | ||| || Sbjct 6934 ATGCCTTCCTTGTCT-TGAATCTTAGCCTTAACATTCTCTATGGTATCACTGGGCTCGAC 6876 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || || |||||||| || | || ||||||||||||||||| Sbjct 6875 TTCAAGTGTAATGGTTTTACCAGTGAGAGTCTTCACAAAAATCTGCAT 6828 Score = 93.3 bits (102), Expect = 3e-14 Identities = 157/225 (70%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 34483 CCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGT 34542 |||||||| || | ||||| || || || ||| ||||| || || ||||| || | Sbjct 3457 CCTCTAAGTCGTAGAACCAAGTGAAGCGTAGACTCTTTTTGTATATTGTAATCAGACAAA 3516 Query 34543 GTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACT 34602 || || | || || | |||||||||||| ||||| | ||| || || || || || | | Sbjct 3517 GTGCGGCCATCCTCTAATTGTTTACCGGCGAATATAAGACGTTGCTGATCTGGAGGAATT 3576 Query 34603 CCCTCCTTGTCTGTGATCTTTTG-TTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTC 34661 || ||||| ||| ||| ||| | ||||| | ||||| || | || ||||| Sbjct 3577 CCTTCCTTATCT-TGAATTTTCGCTTTTACATTTTCAATTGAATCACTGGGTTCAACTTC 3635 Query 34662 CACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | ||| || |||||||| |||| || || || || |||||||| Sbjct 3636 AAGGGTAATAGTTTTACCAGTTAGGGTCTTGACGAAGATCTGCAT 3680 >seq14526 Length=1284 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||||||| || | ||||| || || || ||| ||||| || || ||||| || Sbjct 937 CCACCTCTAAGTCGTAGAACCAAGTGAAGCGTAGACTCTTTTTGTATATTGTAATCAGAC 996 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | || || | |||||||||||| ||||| | ||| || || || || || Sbjct 997 AAAGTGCGGCCATCCTCTAATTGTTTACCGGCGAATATAAGACGTTGCTGATCTGGAGGA 1056 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTG-TTTTAACGATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||| ||||| ||| ||| ||| | ||||| | ||||| || | || || Sbjct 1057 ATTCCTTCCTTATCT-TGAATTTTCGCTTTTACATTTTCAATTGAATCACTGGGTTCAAC 1115 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | ||| || |||||||| |||| || || || || |||||||| Sbjct 1116 TTCAAGGGTAATAGTTTTACCAGTTAGGGTCTTGACGAAGATCTGCAT 1163 Score = 91.5 bits (100), Expect = 9e-14 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||| || | || | ||| ||||||||| ||||| || || ||||| || || Sbjct 718 AGACGCAAAACAAGGTGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTGCGT 777 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | ||| || |||||||| || | | |||||||| || || | ||||||| Sbjct 778 CCATCTTCCAATTGCTTGCCGGCAAAAATCAGTCTTTGTTGGTCTGGTGGGATTCCCTCC 837 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCT-TCGCTCTCCACTTCCACGGT 34667 || ||| ||||| ||||| ||| || || | | | |||||||| | || Sbjct 838 TTATCTTGAATCTTGGCTTTTACATTCTCAATCGTATCACTAGGT-TCCACTTCAAGTGT 896 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| || || || || | || || || ||||||||||| Sbjct 897 TATAGTCTTCCCAGTAAGAGTCTTTACGAAAATCTGCAT 935 >seq1635 Length=24574 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||| | ||||||||| ||||| || || || || || || Sbjct 5562 CCACCACGAAGACGAAGCACAAGATGGAGAGTAGATTCCTTCTGGATATTGTAGTCAGAT 5621 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || ||||||| || || ||||| || || || | || ||||| || || || Sbjct 5622 AGAGTACGTCCGTCTTCCAGCTGCTTACCAGCGAAAATGAGTCGTTGTTGATCTGGGGGG 5681 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCA 34657 | ||||||||||| ||| || | || || | ||| ||||| ||| ||| | Sbjct 5682 ATGCCCTCCTTGTC-CTGAATCTTCGCCTTCACATTCTCAATCGTGTCACTCG-GCTCAA 5739 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | ||||| ||||||||||| | || ||||||||||| ||||| Sbjct 5740 CCTCGAGAGTTATTGTTTTACCGGTGAGGGTCTTCACAAAAATTTGCAT 5788 Score = 84.2 bits (92), Expect = 1e-11 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||| | ||||||||| ||||| || || || || || ||| Sbjct 15501 CCACCGCGAAGACGAAGCACAAGATGGAGAGTTGATTCCTTCTGGATATTGTAGTCAGAA 15442 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| | ||||| || ||||| || || || || | || ||||| || || || Sbjct 15441 AGAGTGCGCCCCTCTTCCAGCTGTTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGGGG 15382 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCA 34657 | ||||||||||| ||| || | || || | ||| ||||| ||| ||| | Sbjct 15381 ATGCCCTCCTTGTC-CTGAATCTTCGCCTTCACATTCTCAATCGTGTCACTCG-GCTCAA 15324 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | || || ||||| || || | || ||||||||||| ||||| Sbjct 15323 CCTCGAGAGTAATTGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 15275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314667414545396