Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq14526 158 1e-33 seq4364 156 4e-33 seq1486 134 1e-26 >seq14526 Length=1284 Score = 158 bits (174), Expect = 1e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || ||||| ||||| || || ||| |||| || |||||||||||||| Sbjct 935 ATGCAGATTTTCGTAAAGACTCTTACTGGGAAGACTATAACACTTGAAGTGGAACCTAGT 876 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || ||||||||| || ||| || |||||||| || || || || ||||| || ||| Sbjct 875 GATACGATTGAGAATGTAAAAGCCAAGATTCAAGATAAGGAGGGAATCCCACCAGACCAA 816 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | |||||||| ||||||||||| | || |||| || |||||| Sbjct 815 CAAAGACTGATTTTTGCCGGCAAGCAATTGGAAGATGGACGCACTCTTTCTGACTACAAC 756 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| |||||||| | ||||||||| | || ||||| || Sbjct 755 ATCCAAAAGGAGTCCACCTTACACCTTGTTTTGCGTCTCCGTGGTGGAAT 706 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || || || ||||||| |||||||| ||||| Sbjct 1163 ATGCAGATCTTCGTCAAGACCCTAACTGGTAAAACTATTACCCTTGAAGTTGAACCCAGT 1104 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || || ||||| | || ||| ||||||||||| || ||||| || || || ||||| Sbjct 1103 GATTCAATTGAAAATGTAAAAGCGAAAATTCAAGATAAGGAAGGAATTCCTCCAGATCAG 1044 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | |||| |||||| |||||||| || || | || | || |||||||| Sbjct 1043 CAACGTCTTATATTCGCCGGTAAACAATTAGAGGATGGCCGCACTTTGTCTGATTACAAT 984 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 || ||||| ||||| || | || |||||| Sbjct 983 ATACAAAAAGAGTCTACGCTTCACTTGGTT 954 >seq4364 Length=12272 Score = 156 bits (172), Expect = 4e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || ||||||||||| || || ||| |||| || || ||||||||||| Sbjct 4137 CATGCAGATTTTCGTAAAAACTCTTACTGGGAAGACTATAACGCTCGAAGTGGAACCTAG 4078 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | ||||||| || ||| || |||||||| || || || || ||||| || || Sbjct 4077 TGATACAATTGAGAATGTAAAAGCCAAGATTCAAGATAAGGAGGGAATCCCACCAGACCA 4018 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | |||||||| ||||||||||| | || |||| || ||||| Sbjct 4017 ACAAAGACTGATTTTTGCCGGCAAGCAATTGGAAGATGGACGCACTCTTTCTGACTACAA 3958 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| ||||||||||| |||||||| | ||||||||| | || ||||| || Sbjct 3957 CATCCAAAAGGAGTCCACCTTACACCTTGTTTTGCGTCTCCGTGGTGGAAT 3907 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || || || ||||||| |||||||| ||||| Sbjct 3680 ATGCAGATCTTCGTCAAGACCCTAACTGGTAAAACTATTACCCTTGAAGTTGAACCCAGT 3621 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || || ||||| | || ||| ||||||||||| || ||||| || || || ||||| Sbjct 3620 GATTCAATTGAAAATGTAAAAGCGAAAATTCAAGATAAGGAAGGAATTCCTCCAGATCAG 3561 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | |||| |||||| |||||||| || || | || | || |||||||| Sbjct 3560 CAACGTCTTATATTCGCCGGTAAACAATTAGAGGATGGCCGCACTTTGTCTGATTACAAT 3501 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 || ||||| ||||| || | || |||||| Sbjct 3500 ATACAAAAAGAGTCTACGCTTCACTTGGTT 3471 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||||| || || || | ||||| |||||||| || || Sbjct 6828 ATGCAGATTTTTGTGAAGACTCTCACTGGTAAAACCATTACACTTGAAGTCGAGCCCAGT 6887 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| || || || ||||||||||| |||||||| || || || ||| Sbjct 6888 GATACCATAGAGAATGTTAAGGCTAAGATTCAAGACAAGGAAGGCATTCCCCCAGACCAA 6947 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || ||||| || | ||||| || ||| | || || ||||| Sbjct 6948 CAGCGTCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGTCGTACCCTCTCGGACTACAAT 7007 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || |||||||| || ||| ||||| | || | || | || ||||| Sbjct 7008 ATCCAAAAGGAATCCACCCTACATCTTGTGCTTCGCCTTCGTGGTGG 7054 >seq1486 Length=25894 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||| | || ||||| |||| ||||||||||| ||||| || Sbjct 18285 ATGCAGATCTTTGTTAAGACTTTAACTGGCAAAACTATCACTCTTGAAGTTGAACCTTCA 18344 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || || || || | || || |||||||| || || ||||| || || || |||||| Sbjct 18345 GATTCCATCGAAAATGTGAAGGCCAAAATTCAGGATAAGGAAGGTATTCCTCCAGATCAA 18404 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | || |||||||| | ||||| | || | || || |||||| Sbjct 18405 CAACGTTTGATCTTTGCTGGCAAACAGCTAGAAGATGGCCGTACTCTATCGGACTACAAC 18464 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || ||||| || ||| | |||||||| || ||| | || ||||| Sbjct 18465 ATCCAGAAGGAATCTACCCTTCATTTGGTGTTACGTCTTCGTGGTGG 18511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434830263786240