Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq4364 158 3e-33 seq1635 147 5e-30 seq14526 145 2e-29 seq5571 89.7 1e-12 >seq4364 Length=12272 Score = 158 bits (174), Expect = 3e-33 Identities = 168/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || ||||| || || ||||| || |||||||| || || |||| ||||| Sbjct 7049 ACGAAGGCGAAGCACAAGATGTAGGGTGGATTCCTTTTGGATATTGTAGTCCGAGAGGGT 6990 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||| ||||||||||| || |||||||| || |||||||| || |||| || Sbjct 6989 ACGACCATCTTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCTGGGGGAATGCC 6930 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||| || ||||| || || || || ||||| ||| | || || || || Sbjct 6929 TTCCTTGTCTTGAATCTTAGCCTTAACATTCTCTATGGTATCACTGGGCTCGACTTCAAG 6870 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || ||||||||||| ||||| | |||||| Sbjct 6869 TGTAATGGTTTTACCAGTGAGAGTCTTCACAAAAATCTGCAT 6828 Score = 145 bits (160), Expect = 2e-29 Identities = 166/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||||| || || || || ||||| || || || ||||| || || || | || || Sbjct 3687 ACGAAGTCGAAGCACTAGATGTAGAGTAGATTCCTTCTGGATATTGTAGTCAGATAGAGT 3746 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||| ||||||| ||||||||| ||||| || || |||||||| || || || | || Sbjct 3747 ACGTCCGTCTTCCAACTGCTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGGGGATGCC 3806 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||| ||||| |||||| || || || | |||| ||||||||||| Sbjct 3807 CTCCTTGTCCTGAATCTTCGCTTTCACATTCTCTATCGAGTCACTCGGCTCAACCTCGAG 3866 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||| || || || || ||||| ||||| ||||| | |||||| Sbjct 3867 AGTAATTGTTTTACCGGTGAGGGTCTTCACAAAAATTTGCATT 3909 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 |||||||| | |||||||| ||||||||||| || || | ||| || | |||||||||| Sbjct 3928 ACAAGGTGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTGCGTCCATCTTCC 3987 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 | |||||||| || || || || | ||||||||| || || | ||| ||||| || || Sbjct 3988 AATTGCTTGCCGGCAAAAATCAGTCTTTGTTGGTCTGGTGGGATTCCCTCCTTATCTTGA 4047 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 ||||| ||| || || || || || ||| ||| || ||||| || || ||||| Sbjct 4048 ATCTTGGCTTTTACATTCTCAATTGTATCACTAGGTTCCACTTCGAGCGTTATAGTCTTC 4107 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || ||||| ||||| || | |||||| || Sbjct 4108 CCAGTAAGAGTTTTTACGAAAATCTGCATGTT 4139 Score = 122 bits (134), Expect = 2e-22 Identities = 159/220 (72%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 ||||| ||| || | |||||| || ||||||||||| || || ||||| | | || | Sbjct 3462 AAGTCGTAGAACCAAGTGAAGCGTAGACTCTTTTTGTATATTGTAATCAGACAAAGTGCG 3521 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 ||||| || | || || || ||||| ||||| ||||| || || ||||||| |||||| Sbjct 3522 GCCATCCTCTAATTGTTTACCGGCGAATATAAGACGTTGCTGATCTGGAGGAATTCCTTC 3581 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 ||| || || || || ||| || ||||| || | ||| | |||||| || || || Sbjct 3582 CTTATCTTGAATTTTCGCTTTTACATTTTCAATTGAATCACTGGGTTCAACTTCAAGGGT 3641 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || || || || ||||| || || | ||||||| Sbjct 3642 AATAGTTTTACCAGTTAGGGTCTTGACGAAGATCTGCATT 3681 Score = 104 bits (114), Expect = 5e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || || || ||||| || || || ||||| || || || ||| || Sbjct 3304 ACGAAGACGAAGCACTAGATGGAGAGTTGATTCCTTCTGGATATTGTAGTCATTAAGAGT 3363 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||| ||||||||||||||||| ||||| || || |||||||| || || || | || Sbjct 3364 ACGTCCGTCTTCCAGCTGCTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGGGGATGCC 3423 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTT 211042 ||||||||||| ||||| |||||| || Sbjct 3424 CTCCTTGTCCTGAATCTTCGCTTTCACATT 3453 >seq1635 Length=24574 Score = 147 bits (162), Expect = 5e-30 Identities = 165/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || ||||| || ||||| || || || ||||| || || || | ||| || Sbjct 15495 CGAAGACGAAGCACAAGATGGAGAGTTGATTCCTTCTGGATATTGTAGTCAGAAAGAGTG 15436 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || ||||||||||| ||||| ||||| || || |||||||| || || || | || Sbjct 15435 CGCCCCTCTTCCAGCTGTTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGGGGATGCCC 15376 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||| ||||| ||||| || || || |||||| |||||||||||| Sbjct 15375 TCCTTGTCCTGAATCTTCGCCTTCACATTCTCAATCGTGTCACTCGGCTCAACCTCGAGA 15316 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || ||||| ||||| ||||| ||||| | ||||| Sbjct 15315 GTAATTGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 15275 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || ||||| || ||||| || || || ||||| || || || | || || Sbjct 5567 ACGAAGACGAAGCACAAGATGGAGAGTAGATTCCTTCTGGATATTGTAGTCAGATAGAGT 5626 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||| |||||||||||||| || ||||| || || |||||||| || || || | || Sbjct 5627 ACGTCCGTCTTCCAGCTGCTTACCAGCGAAAATGAGTCGTTGTTGATCTGGGGGGATGCC 5686 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||| ||||| ||||| || || || |||||| ||||||||||| Sbjct 5687 CTCCTTGTCCTGAATCTTCGCCTTCACATTCTCAATCGTGTCACTCGGCTCAACCTCGAG 5746 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || || || || ||||| ||||| ||||| | ||||| Sbjct 5747 AGTTATTGTTTTACCGGTGAGGGTCTTCACAAAAATTTGCAT 5788 Score = 95.1 bits (104), Expect = 3e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || || || ||||| || || || ||||| || || || ||| || Sbjct 16517 ACGAAGACGAAGCACTAGATGTAGAGTTGATTCCTTCTGGATATTGTAGTCATTAAGAGT 16458 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||| ||||||||||||||||| ||||| || || |||||||| || || || | || Sbjct 16457 ACGTCCGTCTTCCAGCTGCTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGGGGATGCC 16398 Query 211013 TTCCTTGTCCTG 211024 ||||||||||| Sbjct 16397 CTCCTTGTCCTG 16386 >seq14526 Length=1284 Score = 145 bits (160), Expect = 2e-29 Identities = 166/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || || || ||||| || || || ||||| || || || ||| || Sbjct 486 ACGAAGACGAAGCACTAGATGGAGAGTTGATTCCTTCTGGATATTGTAGTCATTAAGAGT 545 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||| ||||||||||||||||| ||||| || || |||||||| || || || | || Sbjct 546 ACGTCCGTCTTCCAGCTGCTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGGGGATGCC 605 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||| ||||| |||||| || || || | |||| ||||||||||| Sbjct 606 CTCCTTGTCCTGAATCTTCGCTTTCACATTCTCTATCGAGTCACTCGGCTCAACCTCGAG 665 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||| || || || || ||||| ||||| ||||| | |||||| Sbjct 666 AGTAATTGTTTTACCGGTGAGGGTCTTCACAAAAATTTGCATT 708 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 |||||||| | |||||||| ||||||||||| || || | ||| || | |||||||||| Sbjct 727 ACAAGGTGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTGCGTCCATCTTCC 786 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 | |||||||| || || || || | ||||||||| || || | ||| ||||| || || Sbjct 787 AATTGCTTGCCGGCAAAAATCAGTCTTTGTTGGTCTGGTGGGATTCCCTCCTTATCTTGA 846 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 ||||| ||| || || || || || ||| ||| || || || || || ||||| Sbjct 847 ATCTTGGCTTTTACATTCTCAATCGTATCACTAGGTTCCACTTCAAGTGTTATAGTCTTC 906 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||||||||| || | |||||| Sbjct 907 CCAGTAAGAGTCTTTACGAAAATCTGCAT 935 Score = 122 bits (134), Expect = 2e-22 Identities = 159/220 (72%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 ||||| ||| || | |||||| || ||||||||||| || || ||||| | | || | Sbjct 945 AAGTCGTAGAACCAAGTGAAGCGTAGACTCTTTTTGTATATTGTAATCAGACAAAGTGCG 1004 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 ||||| || | || || || ||||| ||||| ||||| || || ||||||| |||||| Sbjct 1005 GCCATCCTCTAATTGTTTACCGGCGAATATAAGACGTTGCTGATCTGGAGGAATTCCTTC 1064 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 ||| || || || || ||| || ||||| || | ||| | |||||| || || || Sbjct 1065 CTTATCTTGAATTTTCGCTTTTACATTTTCAATTGAATCACTGGGTTCAACTTCAAGGGT 1124 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || || || || ||||| || || | ||||||| Sbjct 1125 AATAGTTTTACCAGTTAGGGTCTTGACGAAGATCTGCATT 1164 >seq5571 Length=9446 Score = 89.7 bits (98), Expect = 1e-12 Identities = 146/209 (70%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 210909 AGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGC 210968 || |||||||| || | || |||| || || || | || ||| ||||||||||||| Sbjct 7208 AGATGAAGAGTCGATTGCTTCAGGATATTGTATTCAGTAATGGTATGTCCATCTTCCAGC 7267 Query 210969 TGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATC 211028 || || || || || | || ||||| || | |||| | || ||||| |||| ||| Sbjct 7268 TGTTTACCAGCAAAAACGAGTCGTTGATGTTGTGGAGAGATGCCCTCCTTAGCCTGAATC 7327 Query 211029 TTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATCGTCTTT 211085 || |||||||| || || |||||| ||| ||||| || || || || || || Sbjct 7328 TTCGCCTTCACGTTCTCTATCGTGTCA---CTTGGCTCAACGTCAAGTGTAATTGTTTTA 7384 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || | ||| ||||| ||||| | ||||| Sbjct 7385 CCGGAGAGGGTCTTCACAAAAATTTGCAT 7413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158911225293380