Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq4364 86.0 5e-12 >seq4364 Length=12272 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||| | |||||| ||| || ||||| ||||| || || | || || || | Sbjct 7043 GCGAAGCACAAGATGTAGGGTGGATTCCTTTTGGATATTGTAGTCCGAGAGGGTACGACC 6984 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || |||||||| ||||| ||||| ||||||||||| ||||| | ||| | || || || Sbjct 6983 ATCTTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCTGGGGGAATGCCTTCCTT 6924 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 ||| || || || | || | | ||||| || | ||| || || | || || Sbjct 6923 GTCTTGAATCTTAGCCTTAACATTCTCTATGGTATCACTGGGCTCGACTTCAAGTGTAAT 6864 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 |||| || || || || || ||||| || |||||| Sbjct 6863 GGTTTTACCAGTGAGAGTCTTCACAAAAATCTGCATC 6827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429460728769556