Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq14526 129 4e-25 seq4364 129 4e-25 seq1486 114 9e-21 seq1635 102 6e-17 >seq14526 Length=1284 Score = 129 bits (142), Expect = 4e-25 Identities = 157/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| || ||||| || || ||||| || || || |||||||| ||| Sbjct 1164 AATGCAGATCTTCGTCAAGACCCTAACTGGTAAAACTATTACCCTTGAAGTTGAACCCAG 1105 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || | |||||| ||||| |||||| || || ||||| | || |||||||| Sbjct 1104 TGATTCAATTGAAAATGTAAAAGCGAAAATTCAAGATAAGGAAGGAATTCCTCCAGATCA 1045 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||| | ||||| ||||| |||||| | || || | |||||||| |||||||| Sbjct 1044 GCAACGTCTTATATTCGCCGGTAAACAATTAGAGGATGGCCGCACTTTGTCTGATTACAA 985 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 |||||||||||||| || | || || ||| || Sbjct 984 TATACAAAAAGAGTCTACGCTTCACTTGGTTCTA 951 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || || || || || || || || || ||||| || | | Sbjct 935 ATGCAGATTTTCGTAAAGACTCTTACTGGGAAGACTATAACACTTGAAGTGGAACCTAGT 876 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | ||||| || ||| || || || || | || ||||| ||| Sbjct 875 GATACGATTGAGAATGTAAAAGCCAAGATTCAAGATAAGGAGGGAATCCCACCAGACCAA 816 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | | || ||||||||||| ||| ||||||| | ||||||| | || |||||| Sbjct 815 CAAAGACTGATTTTTGCCGGCAAGCAATTGGAAGATGGACGCACTCTTTCTGACTACAAC 756 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || ||||| |||||||| ||||| | ||||| Sbjct 755 ATCCAAAAGGAGTCCACCTTACACCTTGTTTT 724 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||| || || |||||||| || ||||| || |||||||| ||||| | | Sbjct 708 AATGCAAATTTTTGTGAAGACCCTCACCGGTAAAACAATTACTCTCGAGGTTGAGCCGAG 649 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||| | | || ||| | ||| | || | || ||||| || || | || ||||||| Sbjct 648 TGACTCGATAGAGAATGTGAAAGCGAAGA-TTCAGGACAAGGAGGGCATCCCCCCAGATC 590 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||| || | || || || ||||| || |||||||||| ||| ||| | || |||| Sbjct 589 AACAACGACTCATTTTCGCTGGCAAGCAGCTGGAAGACGGACGTACTCTTAATGACTACA 530 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGT 23819 | || || || || || || | ||| |||| Sbjct 529 ATATCCAGAAGGAATCAACTCTCCATCTAGT 499 >seq4364 Length=12272 Score = 129 bits (142), Expect = 4e-25 Identities = 157/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| || ||||| || || ||||| || || || |||||||| ||| Sbjct 3681 AATGCAGATCTTCGTCAAGACCCTAACTGGTAAAACTATTACCCTTGAAGTTGAACCCAG 3622 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || | |||||| ||||| |||||| || || ||||| | || |||||||| Sbjct 3621 TGATTCAATTGAAAATGTAAAAGCGAAAATTCAAGATAAGGAAGGAATTCCTCCAGATCA 3562 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||| | ||||| ||||| |||||| | || || | |||||||| |||||||| Sbjct 3561 GCAACGTCTTATATTCGCCGGTAAACAATTAGAGGATGGCCGCACTTTGTCTGATTACAA 3502 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 |||||||||||||| || | || || ||| || Sbjct 3501 TATACAAAAAGAGTCTACGCTTCACTTGGTTCTA 3468 Score = 122 bits (134), Expect = 6e-23 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 23601 ATTACTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGT 23660 ||| || || |||||||||||||| ||||| || || || || || || || |||||||| Sbjct 4146 ATTTCTAAACATGCAGATTTTCGTAAAAACTCTTACTGGGAAGACTATAACGCTCGAAGT 4087 Query 23661 TGACTCCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACC 23720 || | | || || |||| | ||||| || ||| || || || || | || Sbjct 4086 GGAACCTAGTGATACAATTGAGAATGTAAAAGCCAAGATTCAAGATAAGGAGGGAATCCC 4027 Query 23721 GCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGG 23780 ||||| ||||| | | || ||||||||||| ||| ||||||| | ||||||| | Sbjct 4026 ACCAGACCAACAAAGACTGATTTTTGCCGGCAAGCAATTGGAAGATGGACGCACTCTTTC 3967 Query 23781 CGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || |||||||| ||||| |||||||| ||||| | ||||| Sbjct 3966 TGACTACAACATCCAAAAGGAGTCCACCTTACACCTTGTTTT 3925 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||| || || |||||||| || ||||| || |||||||| ||||| | | Sbjct 3909 AATGCAAATTTTTGTGAAGACCCTCACCGGTAAAACAATTACTCTCGAGGTTGAGCCGAG 3850 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||| | | || ||| | ||| | || | || ||||| || || | || ||||||| Sbjct 3849 TGACTCGATAGAGAATGTGAAAGCGAAGA-TTCAGGACAAGGAGGGCATCCCCCCAGATC 3791 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||| || | || || || ||||| || ||||||||| ||| ||| || || |||| Sbjct 3790 AACAACGACTCATTTTCGCTGGCAAGCAGTTGGAAGACGGACGTACTCTATCTGACTACA 3731 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGT 23819 | || || || || || || ||||| |||| Sbjct 3730 ATATCCAGAAGGAATCTACTCTACATCTAGT 3700 Score = 96.9 bits (106), Expect = 2e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || ||||| || ||||| || || || ||||| || ||| Sbjct 6828 ATGCAGATTTTTGTGAAGACTCTCACTGGTAAAACCATTACACTTGAAGTCGAGCCCAGT 6887 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| |||| | || ||| ||||| ||||| | || ||||| || Sbjct 6888 GATACCATAGAGAATGTTAAGGC-TAAGATTCAAGACAAGGAAGGCATTCCCCCAGACCA 6946 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||| | || ||||| ||||| || || ||||| | || || | || ||||| Sbjct 6947 ACAGCGTCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGTCGTACCCTCTCGGACTACAA 7006 Query 23790 CATACAAAAAGAGTCCACATTACAT 23814 || ||||| || ||||| ||||| Sbjct 7007 TATCCAAAAGGAATCCACCCTACAT 7031 >seq1486 Length=25894 Score = 114 bits (126), Expect = 9e-21 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 23606 TTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACT 23665 |||| |||||||| || ||||| || | || || ||||| |||||||| |||||||| Sbjct 18280 TTAATATGCAGATCTTTGTTAAGACTTTAACTGGCAAAACTATCACTCTTGAAGTTGAAC 18339 Query 23666 CCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAG 23725 | | || | | |||| | || |||||| || || |||||| | || |||| Sbjct 18340 CTTCAGATTCCATCGAAAATGTGAAGGCCAAAATTCAGGATAAGGAAGGTATTCCTCCAG 18399 Query 23726 ATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATT 23785 ||||||| ||||| || ||||| |||||||| || ||||| | || ||| || || | Sbjct 18400 ATCAACAACGTTTGATCTTTGCTGGCAAACAGCTAGAAGATGGCCGTACTCTATCGGACT 18459 Query 23786 ACAACATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 ||||||| || || || || || | ||||| || ||| Sbjct 18460 ACAACATCCAGAAGGAATCTACCCTTCATTTGGTGTTA 18497 >seq1635 Length=24574 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || || |||||||| |||||||| || |||||||| ||||| | | Sbjct 15275 ATGCAAATTTTTGTGAAGACCCTCACTGGAAAAACAATTACTCTCGAGGTTGAGCCGAGT 15334 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | || ||||| || || | || |||||||| Sbjct 15335 GACACGATTGAGAATGTGAAGGCGAAGA-TTCAGGACAAGGAGGGCATCCCCCCAGATCA 15393 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| || | || || || |||||||| |||||||| | |||||| | || ||||| Sbjct 15394 ACAACGACTCATTTTCGCTGGCAAACAGCTGGAAGAGGGGCGCACTCTTTCTGACTACAA 15453 Query 23790 CATACAAAAAGAGTCCAC 23807 || || || || || || Sbjct 15454 TATCCAGAAGGAATCAAC 15471 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || || |||||||| || ||||| || |||||||| ||||| | | Sbjct 5788 ATGCAAATTTTTGTGAAGACCCTCACCGGTAAAACAATAACTCTCGAGGTTGAGCCGAGT 5729 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | || ||||| || || | || |||||||| Sbjct 5728 GACACGATTGAGAATGTGAAGGCGAAGA-TTCAGGACAAGGAGGGCATCCCCCCAGATCA 5670 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| || | || || || || || || |||||||||| ||| ||| || || ||||| Sbjct 5669 ACAACGACTCATTTTCGCTGGTAAGCAGCTGGAAGACGGACGTACTCTATCTGACTACAA 5610 Query 23790 CATACAAAAAGAGTCCAC 23807 || || || || || || Sbjct 5609 TATCCAGAAGGAATCTAC 5592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337942814795696