Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq4364 131 4e-25 seq1486 131 4e-25 seq1635 122 2e-22 seq14526 105 2e-17 seq1388 84.2 5e-11 >seq4364 Length=12272 Score = 131 bits (144), Expect = 4e-25 Identities = 126/162 (78%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || ||||| || || |||||||| ||||||| |||||| || | | || Sbjct 7049 ACGAAGGCGAAGCACAAGATGTAGGGTGGATTCCTTTTGGATATTGTAGTCCGAGAGGGT 6990 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| |||||||| ||||| |||||||| || |||||||| || ||||| || Sbjct 6989 ACGACCATCTTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCTGGGGGAATGCC 6930 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653 |||||||||||| ||||| ||| ||| || ||||| || Sbjct 6929 TTCCTTGTCTTGAATCTTAGCCTTAACATTCTCTATGGTATC 6888 Score = 105 bits (116), Expect = 2e-17 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || || |||||||| ||||| || |||| |||||| || | ||| Sbjct 3304 ACGAAGACGAAGCACTAGATGGAGAGTTGATTCCTTCTGGATATTGTAGTCATTAAGAGT 3363 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| |||||||| |||||||| || ||||||||||| || || || || || Sbjct 3364 ACGTCCGTCTTCCAGCTGCTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGGGGATGCC 3423 Query 225612 TTCCTTGTCTTGGATCTT 225629 |||||||| || ||||| Sbjct 3424 CTCCTTGTCCTGAATCTT 3441 Score = 105 bits (116), Expect = 2e-17 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||||| || || || || ||||| ||||| || |||| |||||| || | | ||| Sbjct 3687 ACGAAGTCGAAGCACTAGATGTAGAGTAGATTCCTTCTGGATATTGTAGTCAGATAGAGT 3746 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| | |||||| |||||||| || ||||||||||| || || || || || Sbjct 3747 ACGTCCGTCTTCCAACTGCTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGGGGATGCC 3806 Query 225612 TTCCTTGTCTTGGATCTT 225629 |||||||| || ||||| Sbjct 3807 CTCCTTGTCCTGAATCTT 3824 >seq1486 Length=25894 Score = 131 bits (144), Expect = 4e-25 Identities = 153/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || || ||||| || |||| ||||| || | | ||| | |||||||||||||| Sbjct 18487 TGAAGGGTAGATTCCTTCTGGATGTTGTAGTCCGATAGAGTACGGCCATCTTCTAGCTGT 18428 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || ||||| ||||| | |||||||| || || |||||||||||||| || || || || Sbjct 18427 TTGCCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTATCCTGAATTTTG 18368 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||||||| |||||||| ||||| | ||| || || | ||||| || ||||| || Sbjct 18367 GCCTTCACATTTTCGATGGAATCTGAAGGTTCAACTTCAAGAGTGATAGTTTTGCCAGTT 18308 Query 225691 AAAGTTTTTATGAACACTTGCATTTTA 225717 ||||| || | || | ||||| ||| Sbjct 18307 AAAGTCTTAACAAAGATCTGCATATTA 18281 >seq1635 Length=24574 Score = 122 bits (134), Expect = 2e-22 Identities = 124/162 (77%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || ||||| |||||||| ||||| || |||| |||||| || | | ||| Sbjct 5567 ACGAAGACGAAGCACAAGATGGAGAGTAGATTCCTTCTGGATATTGTAGTCAGATAGAGT 5626 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| |||||||| |||||||| || ||||||||||| || || || || || Sbjct 5627 ACGTCCGTCTTCCAGCTGCTTACCAGCGAAAATGAGTCGTTGTTGATCTGGGGGGATGCC 5686 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653 |||||||| || ||||| ||||||| || || ||||| Sbjct 5687 CTCCTTGTCCTGAATCTTCGCCTTCACATTCTCAATCGTGTC 5728 Score = 120 bits (132), Expect = 7e-22 Identities = 123/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || ||||| |||||||| ||||| || |||| |||||| || | | ||| Sbjct 15495 CGAAGACGAAGCACAAGATGGAGAGTTGATTCCTTCTGGATATTGTAGTCAGAAAGAGTG 15436 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||| ||||| ||||| || |||||||| || ||||||||||| || || || || || Sbjct 15435 CGCCCCTCTTCCAGCTGTTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGGGGATGCCC 15376 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653 |||||||| || ||||| ||||||| || || ||||| Sbjct 15375 TCCTTGTCCTGAATCTTCGCCTTCACATTCTCAATCGTGTC 15335 Score = 95.1 bits (104), Expect = 3e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || || || ||||| ||||| || |||| |||||| || | ||| Sbjct 16517 ACGAAGACGAAGCACTAGATGTAGAGTTGATTCCTTCTGGATATTGTAGTCATTAAGAGT 16458 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| |||||||| |||||||| || ||||||||||| || || || || || Sbjct 16457 ACGTCCGTCTTCCAGCTGCTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGGGGATGCC 16398 Query 225612 TTCCTTGTCTTG 225623 |||||||| || Sbjct 16397 CTCCTTGTCCTG 16386 >seq14526 Length=1284 Score = 105 bits (116), Expect = 2e-17 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || || |||||||| ||||| || |||| |||||| || | ||| Sbjct 486 ACGAAGACGAAGCACTAGATGGAGAGTTGATTCCTTCTGGATATTGTAGTCATTAAGAGT 545 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| |||||||| |||||||| || ||||||||||| || || || || || Sbjct 546 ACGTCCGTCTTCCAGCTGCTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGGGGATGCC 605 Query 225612 TTCCTTGTCTTGGATCTT 225629 |||||||| || ||||| Sbjct 606 CTCCTTGTCCTGAATCTT 623 Score = 84.2 bits (92), Expect = 5e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||||| || || || || ||||| ||||| || |||| |||||| || | | ||| Sbjct 1170 ACGAAGTCGAAGCACTAGATGTAGAGTAGATTCCTTCTGGATATTGTAGTCAGATAGAGT 1229 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGG 225605 | || ||||| | |||||| |||||||| || ||||||||||| || || || Sbjct 1230 ACGTCCGTCTTCCAACTGCTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGGG 1283 >seq1388 Length=26686 Score = 84.2 bits (92), Expect = 5e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| |||||||||||||| ||||| ||||| || || || || || ||||| |||||||| Sbjct 13591 GAAGATTTGACCATCAGTGATAGATATAACGTTAGTCGGAATGTAGGCAGACACATCACC 13532 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCA 4575 || || || || | |||||| | || || | ||| ||||| ||| Sbjct 13531 AGCCTGAGTCTCAATAACAGGGAGAGCAGTCAATGAACCACCGCCA 13486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192283491891128