Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq2 127 2e-24 >seq2 Length=118199 Score = 127 bits (140), Expect = 2e-24 Identities = 403/620 (65%), Gaps = 10/620 (2%) Strand=Plus/Plus Query 4547 ACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAA 4606 ||| || ||||| |||| ||| ||||| | |||||||| |||||| || || | Sbjct 63182 ACAGGCGAAATCTGTGTGCAGACCCTCGTCACGGCTAATCAACTCGTTACTGAAGGTGAG 63241 Query 4607 TCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAA 4666 || ||||||| || | ||| || | ||| || || | ||| ||||| || || ||||| Sbjct 63242 ACCCGGCATTAGGCCACGCTTCTTCAACCAGAAGATCGAGGCGAATGAACCCGAGAAGAA 63301 Query 4667 TATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTT 4726 | || || || || |||||||| | | || | | ||| | |||||| Sbjct 63302 AACCCCCTCCACTGCAGCAAACGCCATAACACGCTCCGCATACGTCGCGTCTTTGTTCGC 63361 Query 4727 AATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTT 4786 ||||| | | |||||| | || || ||||| || || || | || | || || || Sbjct 63362 GATCCACCTCAGTGCCCAATCCGCCTTCTTCTTCACACATGGCAGAGTCTCAATCGCATT 63421 Query 4787 AAATA---ATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATA 4843 || | | | || || | || |||| | || || || || || || ||| Sbjct 63422 GAAGAGAAAATCACGCTTGGCC---GGCTCTTTCACGTAGGTATCGATGAGCAGTGAATA 63478 Query 4844 CATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGT 4903 ||| || || || || || |||| ||||| || | || || || || | |||||| | Sbjct 63479 CATCTCCGAGTGGATGTTCTCTACTGCAATTTGCATCCCATAGAAACAACGAGCTTCCGG 63538 Query 4904 TACTTGAACTTCGTTACAAAA--TCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTG 4961 | |||||| || | || || || | | || || || ||||| || || ||||||||| Sbjct 63539 AATTTGAACCTCTTGGCAGAAGTTCATGC-ACAAA-TTCTCGTTCACAATTCCGTCACTG 63596 Query 4962 GCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTC 5021 ||||| || || |||| || || || ||||||| | || || || ||| | | | Sbjct 63597 GCTGCGAAGAAAGCCAGCACGTGGGAGATAAAGTGACGCTCACCATCATTCAGTCTCTCC 63656 Query 5022 CAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCT 5081 |||| | | |||||| || || ||||| || || || ||||| || || || | || Sbjct 63657 CAGTCAGTGAGATCTTTCGTCAAGTCAACCTCCTCCACGGTCCAGAAGGAAGCCACTGCC 63716 Query 5082 TTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAATCTGTTGTCG 5141 || ||||| | ||| ||||| | || || || || | | ||||| || || | Sbjct 63717 TTCTTGTAGAACTCCCATATATCGTGGTATTGGATGGGCATCACAACAAACCTACTGGGG 63776 Query 5142 TTAGGTGTAAGAAGCGGTTC 5161 || || ||| || ||||| Sbjct 63777 TTCGGCTCAAGGAGGGGTTC 63796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426965221938596