Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1443 210 3e-49 seq2 203 5e-47 >seq1443 Length=26160 Score = 210 bits (232), Expect = 3e-49 Identities = 435/644 (68%), Gaps = 10/644 (2%) Strand=Plus/Plus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 |||| | ||||| | | ||| ||| ||| || || ||||||||| || ||| || Sbjct 13538 CTCTTTCTCATACTTCGAATAGAGCGCTTCGAACTCCTCTCCCCAACAGTCTGCCAGACC 13597 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAA 78016 |||||||| | || ||| || | ||| |||| || | ||| | | ||| || Sbjct 13598 GGGGCATTCGTGAGGATCCATGAAAGTCCACATCTCATCATCATGAACCCTCTGCATGAA 13657 Query 78017 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGT 78076 |||||||| ||||| ||||| | || ||||||| | | | || || || || Sbjct 13658 AAGATCAGGAATCCAGAGAGCCAGGAAGAGATCTCTAGCACGAATCTCCTCGGCCCCAGT 13717 Query 78077 ATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGC 78136 || | || || | |||| || | ||||| |||||| |||||||||||||| || Sbjct 13718 GTTTCTACGCAGCTCTATGAACTGCAAGACATCAGGATGCCAGGGTTCTAGATATATAGC 13777 Query 78137 CATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAAC 78196 | | | || || || ||||| || || || || | ||| || |||||| |||| || || Sbjct 13778 AAAAGCACCGGGACGCTTATTCCCACCTTGGTCCACATACCTAGCGGTGCTATTGTACAC 13837 Query 78197 TCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACT 78256 || || ||| |||| | || || ||| ||||| ||||| | ||| || | || || Sbjct 13838 TCGCAGCATGGGAACCAAGCCATTGGATTCACCATTGGTTCCGGCGATAAAAGTGCC-CT 13896 Query 78257 TGCG-CGAATATTACTAATGGATATC----CCTATTCCTCCTGCCATCTTAGATATTAGA 78311 ||| |||||| |||| | || || | ||||| || |||| || || | Sbjct 13897 TGCTACGAATAC----AATGCACATTAAGACCAACGCCTCCAGCGTTCTTTGAGATCAAG 13952 Query 78312 GCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGA 78371 || || | || | |||||||||||||||||| |||||||| ||| |||| | ||||| Sbjct 13953 GCACATTGCTTGAGTGTATCGTAGATACCCTCGATACTGTCGTCCTTCATCGTGAGAAGG 14012 Query 78372 AAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGC 78431 |||||||| ||||| ||| || || || | ||| || | |||||||| || || Sbjct 14013 AAACAGCTCGACATCTGAGGAACTGGTGTGCCCGAATTGAAGAGAGTCGGAGAGGCCTGA 14072 Query 78432 GTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGA 78491 || ||||| |||| ||| | ||| | || || |||| || | ||| | || || Sbjct 14073 GTGAACCACTTTTGAGACATTAGGTGATACGTCTCAAAGGCAGCTTCGAGATCATATCCG 14132 Query 78492 TGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTC 78535 || || || | | || ||||| ||||||||||| ||||| || Sbjct 14133 TGGATGCCCAAGGACACGCGCATAAACATATGCTGCGGTCTCTC 14176 >seq2 Length=118199 Score = 203 bits (224), Expect = 5e-47 Identities = 431/637 (68%), Gaps = 11/637 (2%) Strand=Plus/Plus Query 48126 TGTTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCG 48185 || || || || | ||| || ||||| || ||||| || || | ||||| || ||| Sbjct 63168 TGCTTGAAAATCAGACAGGCGAAATCTGTGTGCAGACCCTCGTCACGGCTAATCAACTCG 63227 Query 48186 TTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAA 48245 ||| || |||||||| |||||||| ||||| || || | ||| || || | ||||| Sbjct 63228 TTACTGAAGGTGAGACCCGGCATTAGGCCACGCTTCTTCAACCAGAAGATCGAGGCGAAT 63287 Query 48246 GATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTG 48305 || || || ||||| | || || || || ||||| || ||| | ||| | || | Sbjct 63288 GAACCCGAGAAGAAAACCCCCTCCACTGCAGCAAACGCCATAACACGCTCCGCATACGTC 63347 Query 48306 GCTTCGTTGTGT---ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATT 48362 || || |||| ||||||| |||||||||| ||||||||||| ||||| |||| Sbjct 63348 GCGTCTTTGTTCGCGATCCACCTCAGTGCCCAATCCGCCTTCTTCTTCACACATGGCAGA 63407 Query 48363 GTTTCTATAGCATTAAAGAGAAAGtttttttCATTGC--TATCTTTAACGTAAGTATCTA 48420 || || || ||||| |||||||| | | | || ||||| ||||| ||||| | Sbjct 63408 GTCTCAATCGCATTGAAGAGAAA--ATCACGCTTGGCCGGCTCTTTCACGTAGGTATCGA 63465 Query 48421 TTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAAC 48480 | | || |||||| || ||||| || || || | ||| || || | || || |||| Sbjct 63466 TGAGCAGTGAATACATCTCCGAGTGGATGTTCTCTACTGCAATTTGCATCCCATAGAAAC 63525 Query 48481 ATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCA-GC-CAAATTCTCATTTAC 48538 | | ||||| | || || ||||| || || ||||| || ||||||||| || || Sbjct 63526 AACGAGCTTCCGGAATTTGAACCTCTTGGCAGAA--GTTCATGCACAAATTCTCGTTCAC 63583 Query 48539 TATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGA 48598 ||||| ||||| || || || || || | || || ||||| | || Sbjct 63584 AATTCCGTCACTGGCTGCGAAGAAAGCCAGCACGTGGGAGATAAAGTGACGCTCACCATC 63643 Query 48599 AGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAA 48658 | ||||| | | ||||||| ||| |||||| | | || || || || | ||||| || Sbjct 63644 ATTCAGTCTCTCCCAGTCAGTGAGATCTTTCGTCAAGTCAACCTCCTCCACGGTCCAGAA 63703 Query 48659 TGATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAAC 48718 || ||| |||| || || || | | ||||||||| ||||||||| || | | ||| Sbjct 63704 GGAAGCCACTGCCTTCTTGTAGAACTCCCATATATCGTGGTATTGGATGGGCATCACAAC 63763 Query 48719 AAATCTATTTGGATTTTTTGCAAGGATAGGTTCCATG 48755 ||| ||| | || || |||||| ||||| ||| Sbjct 63764 AAACCTACTGGGGTTCGGCTCAAGGAGGGGTTCAATG 63800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694528025367680