Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1443 235 8e-57 >seq1443 Length=26160 Score = 235 bits (260), Expect = 8e-57 Identities = 443/649 (68%), Gaps = 2/649 (0%) Strand=Plus/Plus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 |||| | ||||| | | ||| | | ||| || || ||||||||| || ||| ||| Sbjct 13538 CTCTTTCTCATACTTCGAATAGAGCGCTTCGAACTCCTCTCCCCAACAGTCTGCCAGACC 13597 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611 || ||||| | ||| ||| || | |||| |||| || | ||||| | ||| || Sbjct 13598 GGGGCATTCGTGAGGATCCATGAAAGTCCACATCTCATCATCATGAACCCTCTGCATGAA 13657 Query 76612 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGT 76671 |||||||| ||||| ||||| | || ||||||| | | | || || || || Sbjct 13658 AAGATCAGGAATCCAGAGAGCCAGGAAGAGATCTCTAGCACGAATCTCCTCGGCCCCAGT 13717 Query 76672 ATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGC 76731 || | || |||| ||||| || | ||||| |||||| |||||||||||||| || Sbjct 13718 GTTTCTACGCAGCTCTATGAACTGCAAGACATCAGGATGCCAGGGTTCTAGATATATAGC 13777 Query 76732 CATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAAC 76791 | | |||| || || ||||| || || || || | ||| || || ||| |||| || || Sbjct 13778 AAAAGCACCGGGACGCTTATTCCCACCTTGGTCCACATACCTAGCGGTGCTATTGTACAC 13837 Query 76792 TCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACA 76851 || || ||| |||| | ||| || ||| |||||| ||||| | ||| || | || | Sbjct 13838 TCGCAGCATGGGAACCAAGCCATTGGATTCACCATTGGTTCCGGCGATAAAAGTGCC-CT 13896 Query 76852 TGC-ACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCAC 76910 ||| ||||||| | | | || || | ||||| || | || ||||| | |||| Sbjct 13897 TGCTACGAATACAATGCACATTAAGACCAACGCCTCCAGCGTTCTTTGAGATCAAGGCAC 13956 Query 76911 AGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAAC 76970 | | || | ||| || ||||| ||||| ||||| || ||| |||| | ||||| |||| Sbjct 13957 ATTGCTTGAGTGTATCGTAGATACCCTCGATACTGTCGTCCTTCATCGTGAGAAGGAAAC 14016 Query 76971 AGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGA 77030 |||| ||||| ||| || || || | ||| || | || ||||| || ||||||| Sbjct 14017 AGCTCGACATCTGAGGAACTGGTGTGCCCGAATTGAAGAGAGTCGGAGAGGCCTGAGTGA 14076 Query 77031 ACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAA 77090 |||| |||| ||| | ||| | || || |||| | ||||| | ||| || || | Sbjct 14077 ACCACTTTTGAGACATTAGGTGATACGTCTCAAAGGCAGCTTCGAGATCATATCCGTGGA 14136 Query 77091 TTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTT 77139 | || | | || ||||| ||||||||||| |||| || |||||| Sbjct 14137 TGCCCAAGGACACGCGCATAAACATATGCTGCGGTCTCTCCCAAGTCTT 14185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712789923843840