Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq14526 132 1e-25 seq4364 132 1e-25 seq1486 123 6e-23 >seq14526 Length=1284 Score = 132 bits (146), Expect = 1e-25 Identities = 159/212 (75%), Gaps = 7/212 (3%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| |||||||||||||| || |||||||| | ||||| | ||||| |||| Sbjct 957 CAAG-TGAAGCGTAGACTCTTTTTGTATATTGTAATCAGACAAAGTGCGGCCATCCTCTA 1015 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||| |||||||| ||||| | ||||| || | | ||||||||||| ||||||| Sbjct 1016 ATTGTTTACCGGCGAATATAAGACGTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGAA 1075 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTT 152073 |||| ||| ||| | || | || | ||| || |||||||| |||||||||| Sbjct 1076 TTTTCGCTTTTACATTTTCAA--TTGAAT-CACTGGGTTCAACTTCAAGGGTAATAGTTT 1132 Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || || || ||||| ||||||| ||||||| Sbjct 1133 TACCAGTTAGGGTCTTGACGAAGATCTGCATT 1164 Score = 107 bits (118), Expect = 4e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 ||||| || | || ||||| |||||||||||||| || | | ||| | |||||||| Sbjct 727 ACAAGGTGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTGCGTCCATCTTCC 786 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 | || ||||| || || || || || ||||| | | |||||| ||||| |||||| Sbjct 787 AATTGCTTGCCGGCAAAAATCAGTCTTTGTTGGTCTGGTGGGATTCCCTCCTTATCTTGA 846 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 || || ||| ||| |||| | | || | || |||||||| || ||||| || Sbjct 847 ATCTTGGCTTTTACATTCTCAATCGTATCACTAGGTTCCACTTCAAGTGTTATAGTCTTC 906 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || |||||||| ||||| | |||||| Sbjct 907 CCAGTAAGAGTCTTTACGAAAATCTGCAT 935 >seq4364 Length=12272 Score = 132 bits (146), Expect = 1e-25 Identities = 159/212 (75%), Gaps = 7/212 (3%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| |||||||||||||| || |||||||| | ||||| | ||||| |||| Sbjct 3474 CAAG-TGAAGCGTAGACTCTTTTTGTATATTGTAATCAGACAAAGTGCGGCCATCCTCTA 3532 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||| |||||||| ||||| | ||||| || | | ||||||||||| ||||||| Sbjct 3533 ATTGTTTACCGGCGAATATAAGACGTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGAA 3592 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTT 152073 |||| ||| ||| | || | || | ||| || |||||||| |||||||||| Sbjct 3593 TTTTCGCTTTTACATTTTCAA--TTGAAT-CACTGGGTTCAACTTCAAGGGTAATAGTTT 3649 Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || || || ||||| ||||||| ||||||| Sbjct 3650 TACCAGTTAGGGTCTTGACGAAGATCTGCATT 3681 Score = 123 bits (136), Expect = 6e-23 Identities = 157/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| || || || || |||||||| ||||| || | | || | |||||| Sbjct 7039 AGCACAAGATGTAGGGTGGATTCCTTTTGGATATTGTAGTCCGAGAGGGTACGACCATCT 6980 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || |||||||| | ||| ||||| | | || |||||||| ||| Sbjct 6979 TCAAGCTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCT 6920 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 ||||| || || ||| |||||| | | || ||| ||| |||||||| ||||| Sbjct 6919 TGAATCTTAGCCTTAACATTCTCTATGGTATC---ACTGGGCTCGACTTCAAGTGTAATG 6863 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || |||||||||||||| || | |||||| Sbjct 6862 GTTTTACCAGTGAGAGTCTTCACAAAAATCTGCAT 6828 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 ||||| || | || ||||| |||||||||||||| || | | ||| | |||||||| Sbjct 3928 ACAAGGTGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTGCGTCCATCTTCC 3987 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 | || ||||| || || || || || ||||| | | |||||| ||||| |||||| Sbjct 3988 AATTGCTTGCCGGCAAAAATCAGTCTTTGTTGGTCTGGTGGGATTCCCTCCTTATCTTGA 4047 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 || || ||| ||| |||| | | || | || ||||| || || ||||| || Sbjct 4048 ATCTTGGCTTTTACATTCTCAATTGTATCACTAGGTTCCACTTCGAGCGTTATAGTCTTC 4107 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || ||||| || ||||| | |||||| || Sbjct 4108 CCAGTAAGAGTTTTTACGAAAATCTGCATGTT 4139 >seq1486 Length=25894 Score = 123 bits (136), Expect = 6e-23 Identities = 152/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 |||||| ||||| || || ||||||||||| || | || ||| | ||||||||||| Sbjct 18488 ATGAAGGGTAGATTCCTTCTGGATGTTGTAGTCCGATAGAGTACGGCCATCTTCTAGCTG 18429 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| || || ||||| | | || || || | | || |||||||| || |||||||| Sbjct 18428 TTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTATCCTGAATTTT 18369 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 || ||| | || | | |||||| || ||||||||||| ||||||||||| || Sbjct 18368 GGCCTTCACATTTTCGATGGAATCTGAAGGTTCAACTTCAAGAGTGATAGTTTTGCCAGT 18309 Query 152081 GAGAGTCTTCACGAAGACCTGCATTTTA 152108 | |||||| || |||| |||||| ||| Sbjct 18308 TAAAGTCTTAACAAAGATCTGCATATTA 18281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153581132670252