Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1486 174 3e-38 seq14526 167 5e-36 seq4364 167 5e-36 seq1635 120 6e-22 seq4319 91.5 3e-13 >seq1486 Length=25894 Score = 174 bits (192), Expect = 3e-38 Identities = 177/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || | |||| ||| | || ||| || |||||||||||||| | Sbjct 18512 ACCACCACGAAGACGTAACACCAAATGAAGGGTAGATTCCTTCTGGATGTTGTAGTCCGA 18453 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || |||||||| ||||| ||||| || |||||||||||||||||||| || || Sbjct 18452 TAGAGTACGGCCATCTTCTAGCTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAGG 18393 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| ||||| || || || || || || || | ||||| | || |||| ||| || Sbjct 18392 AATACCTTCCTTATCCTGAATTTTGGCCTTCACATTTTCGATGGAATCTGAAGGTTCAAC 18333 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||| |||||||| || || || || ||||||||||| || |||||||| || Sbjct 18332 TTCAAGAGTGATAGTTTTGCCAGTTAAAGTCTTAACAAAGATCTGCATATT 18282 >seq14526 Length=1284 Score = 167 bits (184), Expect = 5e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || | || || ||||| ||| || ||||||||||||||||||| | Sbjct 709 CCACCACGGAGACGCAAAACAAGGTGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAA 768 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| ||||| || | ||| || |||||||| |||| | ||||||||| || Sbjct 769 AGAGTGCGTCCATCTTCCAATTGCTTGCCGGCAAAAATCAGTCTTTGTTGGTCTGGTGGG 828 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||| ||||| ||||| |||||||| | || || || || || ||| ||| Sbjct 829 ATTCCCTCCTTATCTTGAATCTTGGCTTTTACATTCTCAATCGTATCACTAGGTTCCACT 888 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || || ||||| || || | |||||| ||||| |||||||| Sbjct 889 TCAAGTGTTATAGTCTTCCCAGTAAGAGTCTTTACGAAAATCTGCAT 935 Score = 129 bits (142), Expect = 1e-24 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | || || || |||| || | ||| |||||||| || ||||| |||| Sbjct 936 ACCACCTCTAAGTCGTAGAACCAAGTGAAGCGTAGACTCTTTTTGTATATTGTAATCAGA 995 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | |||||||||||||||| |||||| ||||| || || | |||||| || || || Sbjct 996 CAAAGTGCGGCCATCCTCTAATTGTTTACCGGCGAATATAAGACGTTGCTGATCTGGAGG 1055 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || ||||| ||||| || || |||||||| | || || | || | ||| || Sbjct 1056 AATTCCTTCCTTATCTTGAATTTTCGCTTTTACATTTTCAATTGAATCACTGGGTTCAAC 1115 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 ||| || || || || ||||| || | ||||| ||||| ||||||||| Sbjct 1116 TTCAAGGGTAATAGTTTTACCAGTTAGGGTCTTGACGAAGATCTGCATT 1164 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 282871 AACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG 282930 |||||||||| || ||||| || ||||| | || ||| || ||||| ||||||||| Sbjct 479 AACCACCACGAAGACGAAGCACTAGATGGAGAGTTGATTCCTTCTGGATATTGTAGTCAT 538 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 ||| || || || || || || || || || || || || | |||||||| || | Sbjct 539 TAAGAGTACGTCCGTCTTCCAGCTGCTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGG 598 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 | || ||||||||||| || ||||| ||||| || | || || | ||| | || | Sbjct 599 GGATGCCCTCCTTGTCCTGAATCTTCGCTTTCACATTCTCTATCGAGTCACTCGGCTCAA 658 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 | |||||||| || || ||||| || | ||||| || || || |||||| Sbjct 659 CCTCGAGAGTAATTGTTTTACCGGTGAGGGTCTTCACAAAAATTTGCATT 708 >seq4364 Length=12272 Score = 167 bits (184), Expect = 5e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || | || || ||||| ||| || ||||||||||||||||||| | Sbjct 3910 CCACCACGGAGACGCAAAACAAGGTGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAA 3969 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| ||||| || | ||| || |||||||| |||| | ||||||||| || Sbjct 3970 AGAGTGCGTCCATCTTCCAATTGCTTGCCGGCAAAAATCAGTCTTTGTTGGTCTGGTGGG 4029 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||| ||||| ||||| |||||||| | || || || || || ||| ||| Sbjct 4030 ATTCCCTCCTTATCTTGAATCTTGGCTTTTACATTCTCAATTGTATCACTAGGTTCCACT 4089 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||||| || || ||||| || || | ||| || ||||| |||||||| || Sbjct 4090 TCGAGCGTTATAGTCTTCCCAGTAAGAGTTTTTACGAAAATCTGCATGTT 4139 Score = 156 bits (172), Expect = 9e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 282871 AACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG 282930 |||||||||| |||||||| || ||||||| ||| ||| |||||||| |||||||| | Sbjct 7056 AACCACCACGAAGGCGAAGCACAAGATGTAGGGTGGATTCCTTTTGGATATTGTAGTCCG 6997 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 || || || ||||| || || || || || |||||||| | ||| |||||||| | Sbjct 6996 AGAGGGTACGACCATCTTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCTGGGG 6937 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 |||| || ||||||||||| ||||| || || || | || || || || | |||| Sbjct 6936 GAATGCCTTCCTTGTCTTGAATCTTAGCCTTAACATTCTCTATGGTATCACTGGGCTCGA 6877 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||| || || || || ||||| || | |||||| || || |||||||| Sbjct 6876 CTTCAAGTGTAATGGTTTTACCAGTGAGAGTCTTCACAAAAATCTGCAT 6828 Score = 125 bits (138), Expect = 1e-23 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 |||||||| || ||||| |||| | |||||||||||||||| |||||| ||||| || Sbjct 3490 TCTTTTTGTATATTGTAATCAGACAAAGTGCGGCCATCCTCTAATTGTTTACCGGCGAAT 3549 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | |||||| || || ||||| || ||||| ||||| || || |||||||| | Sbjct 3550 ATAAGACGTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATTTTCGCTTTTACATTT 3609 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || || | || | ||| ||||| || || || || ||||| || | ||||| ||| Sbjct 3610 TCAATTGAATCACTGGGTTCAACTTCAAGGGTAATAGTTTTACCAGTTAGGGTCTTGACG 3669 Query 283089 AATATCTGCATT 283100 || ||||||||| Sbjct 3670 AAGATCTGCATT 3681 Score = 114 bits (126), Expect = 3e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || ||||| || ||||||| || ||| || ||||| |||||||||| Sbjct 3682 CCACCACGAAGTCGAAGCACTAGATGTAGAGTAGATTCCTTCTGGATATTGTAGTCAGAT 3741 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || || || || | || || || || || || | |||||||| || || Sbjct 3742 AGAGTACGTCCGTCTTCCAACTGCTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGGGG 3801 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| || ||||| ||||| || | || || | ||| | || || Sbjct 3802 ATGCCCTCCTTGTCCTGAATCTTCGCTTTCACATTCTCTATCGAGTCACTCGGCTCAACC 3861 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 |||||||| || || ||||| || | ||||| || || || |||||| Sbjct 3862 TCGAGAGTAATTGTTTTACCGGTGAGGGTCTTCACAAAAATTTGCATT 3909 Score = 93.3 bits (102), Expect = 9e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 282871 AACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG 282930 |||||||||| || ||||| || ||||| | || ||| || ||||| ||||||||| Sbjct 3297 AACCACCACGAAGACGAAGCACTAGATGGAGAGTTGATTCCTTCTGGATATTGTAGTCAT 3356 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 ||| || || || || || || || || || || || || | |||||||| || | Sbjct 3357 TAAGAGTACGTCCGTCTTCCAGCTGCTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGG 3416 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTAC 283024 | || ||||||||||| || ||||| ||||| || Sbjct 3417 GGATGCCCTCCTTGTCCTGAATCTTCGCTTTCAC 3450 >seq1635 Length=24574 Score = 120 bits (132), Expect = 6e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 282871 AACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG 282930 ||||||| || || ||||| || ||||| | || ||| || ||||| |||||||||| Sbjct 15503 AACCACCGCGAAGACGAAGCACAAGATGGAGAGTTGATTCCTTCTGGATATTGTAGTCAG 15444 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 ||| ||||| || || || || ||||| || || || || | |||||||| || | Sbjct 15443 AAAGAGTGCGCCCCTCTTCCAGCTGTTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGG 15384 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 | || ||||||||||| || ||||| || || || | || || ||||| | || | Sbjct 15383 GGATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTCTCAATCGTGTCACTCGGCTCAA 15324 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | |||||||| || || || || || | ||||| || || || ||||| Sbjct 15323 CCTCGAGAGTAATTGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 15275 Score = 116 bits (128), Expect = 8e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 282871 AACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG 282930 |||||||||| || ||||| || ||||| | || ||| || ||||| |||||||||| Sbjct 5560 AACCACCACGAAGACGAAGCACAAGATGGAGAGTAGATTCCTTCTGGATATTGTAGTCAG 5619 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 || || || || || || || || || || || || || | |||||||| || | Sbjct 5620 ATAGAGTACGTCCGTCTTCCAGCTGCTTACCAGCGAAAATGAGTCGTTGTTGATCTGGGG 5679 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 | || ||||||||||| || ||||| || || || | || || ||||| | || | Sbjct 5680 GGATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTCTCAATCGTGTCACTCGGCTCAA 5739 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | |||||||| || || ||||| || | ||||| || || || ||||| Sbjct 5740 CCTCGAGAGTTATTGTTTTACCGGTGAGGGTCTTCACAAAAATTTGCAT 5788 Score = 84.2 bits (92), Expect = 5e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 282871 AACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG 282930 |||||||||| || ||||| || ||||||| || ||| || ||||| ||||||||| Sbjct 16524 AACCACCACGAAGACGAAGCACTAGATGTAGAGTTGATTCCTTCTGGATATTGTAGTCAT 16465 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 ||| || || || || || || || || || || || || | |||||||| || | Sbjct 16464 TAAGAGTACGTCCGTCTTCCAGCTGCTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGG 16405 Query 282991 GAATACCCTCCTTGTCTTG 283009 | || ||||||||||| || Sbjct 16404 GGATGCCCTCCTTGTCCTG 16386 >seq4319 Length=12421 Score = 91.5 bits (100), Expect = 3e-13 Identities = 218/330 (66%), Gaps = 0/330 (0%) Strand=Plus/Plus Query 273609 GGAACGTTCGTAGACCAACCGGTGCCAATACCGGAAGAACCATTCACCAGAATACTCGGG 273668 ||||| || ||| ||| ||||| |||||||| | ||| || | || | | ||| Sbjct 6818 GGAACCTTGGTACTCCACCCGGTACCAATACCCTCCGCACCGTTAATAAGCACCATAGGG 6877 Query 273669 ATAATTGGGACATAATATTCGGGCTCAATTTTATCACCATCGTCGTAAAGGTACTTCAAC 273728 ||||| || | ||| ||||||| ||||| | | | ||| || | |||||| || | Sbjct 6878 ATAATAGGAATATACCATTCGGGTTCAATCCTCTGATTATCATCCTGAAGGTAATTGAGG 6937 Query 273729 AAAGCATCATCCGTATCAACGAAAACCTTTCGCGTCTGAGGATTCAGTTTCGTGAAAATG 273788 | ||| ||||| | ||| ||| || |||| ||| | ||| ||| |||||| ||| Sbjct 6938 ATAGCGTCATCGTTTTCATGGAACACTTTTCTAGTCAGGGGACTCAACACCGTGAAGATG 6997 Query 273789 TACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGACCCTCGGGC 273848 || | |||| || || || ||||| || | | ||| |||||||| || Sbjct 6998 TAACGGGCAGAAGCGGAATCTTTACCACCCGACAATCGAGTACCGAACTGACCGATAGGA 7057 Query 273849 AGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACGATAGTCCCC 273908 || || || | || || ||| || |||||||||||| ||| | ||||| ||| Sbjct 7058 AGCAGGAGATTGAGATTATTAGAACCAACAAAATCCTGAGCCAGATTAATAATAGTTCCC 7117 Query 273909 TGAAGGGATACCTCGCCGTGGTGATAGGCG 273938 || || | || || |||||||||||| Sbjct 7118 ATCAGCGACATTTCACCATGGTGATAGGCG 7147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046521775258648