Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq4364 95.1 9e-15 seq1486 95.1 9e-15 seq1635 93.3 3e-14 seq14526 84.2 2e-11 >seq4364 Length=12272 Score = 95.1 bits (104), Expect = 9e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| || || || ||| ||||||||||| ||||| || | ||| || | || || Sbjct 7037 CACAAGATGTAGGGTGGATTCCTTTTGGATATTGTAGTCCGAGAGGGTACGACCATCTTC 6978 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| || |||||||| | |||||| || |||| || | |||||||| || Sbjct 6977 AAGCTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTG 6918 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| || | || ||| ||||||| || || || || || | ||||| || | Sbjct 6917 AATCTT-AGCCTTAACATTCTCTATGGTATCACTGGGCTCGACTTCAAGTGTAATGGTTT 6859 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || ||||| |||||||| || || ||||| Sbjct 6858 TACCAGTGAGAGTCTTCACAAAAATCTGCAT 6828 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| || | |||| | ||| || || || || ||||| ||||| ||||| || Sbjct 3678 CATTCCACCACGAAGTCGAAGCACTAGATGTAGAGTAGATTCCTTCTGGATATTGTAGTC 3737 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || || |||| |||| |||||| || || || || | || || ||||||| Sbjct 3738 AGATAGAGTACGTCCGTCTTCCAACTGCTTGCCAGCGAAAATGAGTCGTTGTTGATCTGG 3797 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| ||| |||||| |||| | ||| |||| | ||| | | Sbjct 3798 GGGGATGCCCTCCTTGTCCTGAATCTTC-GCTTTCACATTCTCTATCGAGTCACTCGGCT 3856 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||| | ||||| || || || |||||||||||||| || |||||||| Sbjct 3857 CAACCTCGAGAGTAATTGTTTTACCGGTGAGGGTCTTCACAAAAATTTGCAT 3908 Score = 86.0 bits (94), Expect = 5e-12 Identities = 162/236 (69%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| || | || | ||| || ||||| | ||| |||||||||||||||||| Sbjct 3903 TTGCATTCCACCACGGAGACGCAAAACAAGGTGTAAGGTGGACTCCTTTTGGATGTTGTA 3962 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | || ||| | || |||| ||||| |||||||| |||| | || || || Sbjct 3963 GTCAGAAAGAGTGCGTCCATCTTCCAATTGCTTGCCGGCAAAAATCAGTCTTTGTTGGTC 4022 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 || || | || ||||| || ||||| |||| | ||| | || || || | Sbjct 4023 TGGTGGGATTCCCTCCTTATCTTGAATCTT-GGCTTTTACATTCTCAATTGTATCACTAG 4081 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||||| || | ||| || ||||| || || || || || ||||| || |||||| Sbjct 4082 GTTCCACTTCGAGCGTTATAGTCTTCCCAGTAAGAGTTTTTACGAAAATCTGCATG 4137 >seq1486 Length=25894 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 44126 AACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCG 44185 ||||||| ||||| || ||||| ||||||||||| || | || || | || Sbjct 18496 AACACCAAATGAAGGGTAGATTCCTTCTGGATGTTGTAGTCCGATAGAGTACGGCCATCT 18437 Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245 || ||||| || || |||||||||||||| || ||||||| ||| | ||||||||| ||| Sbjct 18436 TCTAGCTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTATCC 18377 Query 44246 GTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 || || ||||| || | |||| || | | ||| || || | || || || Sbjct 18376 TGAATTTTGGCCTTCACATTTTCGATGGAATCTGAAGGTTCAACTTCAAGAGTGATAGTT 18317 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || | ||||| || ||||| ||||| Sbjct 18316 TTGCCAGTTAAAGTCTTAACAAAGATCTGCAT 18285 >seq1635 Length=24574 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||| ||||| ||||| || | || |||| | || |||||||| || || || || Sbjct 15465 TCCTTCTGGATATTGTAGTCAGAAAGAGTGCGCCCCTCTTCCAGCTGTTTGCCAGCGAAA 15406 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 || | || || ||||||| || | || ||||| ||| |||||| ||||| | Sbjct 15405 ATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTC 15346 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 | || ||||| | || ||||| | ||||| || ||||| |||||||||||||| Sbjct 15345 TCAATCGTGTCACTCGGCTCAACCTCGAGAGTAATTGTTTTTCCAGTGAGGGTCTTCACA 15286 Query 44327 AAGATTTGCAT 44337 || |||||||| Sbjct 15285 AAAATTTGCAT 15275 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||| ||||| ||||| || | || || |||| ||||||||||| || || || Sbjct 5598 TCCTTCTGGATATTGTAGTCAGATAGAGTACGTCCGTCTTCCAGCTGCTTACCAGCGAAA 5657 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 || | || || ||||||| || | || ||||| ||| |||||| ||||| | Sbjct 5658 ATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTC 5717 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 | || ||||| | || ||||| | || || || || || |||||||||||||| Sbjct 5718 TCAATCGTGTCACTCGGCTCAACCTCGAGAGTTATTGTTTTACCGGTGAGGGTCTTCACA 5777 Query 44327 AAGATTTGCAT 44337 || |||||||| Sbjct 5778 AAAATTTGCAT 5788 >seq14526 Length=1284 Score = 84.2 bits (92), Expect = 2e-11 Identities = 161/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| || | || | ||| || ||||| | ||| |||||||||||||||||| Sbjct 702 TTGCATTCCACCACGGAGACGCAAAACAAGGTGTAAGGTGGACTCCTTTTGGATGTTGTA 761 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | || ||| | || |||| ||||| |||||||| |||| | || || || Sbjct 762 GTCAGAAAGAGTGCGTCCATCTTCCAATTGCTTGCCGGCAAAAATCAGTCTTTGTTGGTC 821 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 || || | || ||||| || ||||| |||| | ||| | || || || | Sbjct 822 TGGTGGGATTCCCTCCTTATCTTGAATCTT-GGCTTTTACATTCTCAATCGTATCACTAG 880 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||| || | || || ||||| || || || ||||| ||||| || ||||| Sbjct 881 GTTCCACTTCAAGTGTTATAGTCTTCCCAGTAAGAGTCTTTACGAAAATCTGCAT 935 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||| ||||| ||||| || || || |||| ||||||||||| || || || Sbjct 517 TCCTTCTGGATATTGTAGTCATTAAGAGTACGTCCGTCTTCCAGCTGCTTGCCAGCGAAA 576 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 || | || || ||||||| || | || ||||| ||| |||||| |||| | || Sbjct 577 ATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTTGTCCTGAATCTTC-GCTTTCACATT 635 Query 44267 C-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | |||| | ||| | || ||||| | ||||| || || || |||||||||||||| Sbjct 636 CTCTATCGAGTCACTCGGCTCAACCTCGAGAGTAATTGTTTTACCGGTGAGGGTCTTCAC 695 Query 44326 GAAGATTTGCAT 44337 || |||||||| Sbjct 696 AAAAATTTGCAT 707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359919271746804