Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1635 154 4e-32 seq14526 140 8e-28 seq4364 131 4e-25 >seq1635 Length=24574 Score = 154 bits (170), Expect = 4e-32 Identities = 160/208 (77%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 |||||||| ||||| || ||||| |||||||| || || |||||||| || || || Sbjct 15278 CAAATTTTTGTGAAGACCCTCACTGGAAAAACAATTACTCTCGAGGTTGA--GCCGAGTG 15335 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| || ||||| || || |||||||||||||| || || ||||| || || || | Sbjct 15336 ACACGATTGAGAATGTGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCCCCAGATCAAC 15395 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 ||||||| || ||||| || |||||||| ||||| || | |||||| | || || || Sbjct 15396 AACGACTCATTTTCGCTGGCAAACAGCTGGAAGAGGGGCGCACTCTTTCTGACTACAATA 15455 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || |||||||| || |||||||| Sbjct 15456 TCCAGAAGGAATCAACTCTCCATCTTGT 15483 Score = 140 bits (154), Expect = 8e-28 Identities = 157/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 |||||||| ||||| || ||||| || ||||| || || |||||||| || || || Sbjct 5785 CAAATTTTTGTGAAGACCCTCACCGGTAAAACAATAACTCTCGAGGTTGA--GCCGAGTG 5728 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| || ||||| || || |||||||||||||| || || ||||| || || || | Sbjct 5727 ACACGATTGAGAATGTGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCCCCAGATCAAC 5668 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 ||||||| || ||||| || || ||||| ||||| ||| | ||||| | || || || Sbjct 5667 AACGACTCATTTTCGCTGGTAAGCAGCTGGAAGACGGACGTACTCTATCTGACTACAATA 5608 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || ||||| || || |||||||| Sbjct 5607 TCCAGAAGGAATCTACTCTCCATCTTGT 5580 >seq14526 Length=1284 Score = 140 bits (154), Expect = 8e-28 Identities = 157/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 |||||||| ||||| || ||||| || ||||| || || |||||||| || || || Sbjct 704 CAAATTTTTGTGAAGACCCTCACCGGTAAAACAATTACTCTCGAGGTTGA--GCCGAGTG 647 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || | || ||||| || ||| |||||||||||||| || || ||||| || || || | Sbjct 646 ACTCGATAGAGAATGTGAAAGCGAAGATTCAGGACAAGGAGGGCATCCCCCCAGATCAAC 587 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 ||||||| || ||||| || || ||||| ||||| ||| | |||||| || || || Sbjct 586 AACGACTCATTTTCGCTGGCAAGCAGCTGGAAGACGGACGTACTCTTAATGACTACAATA 527 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || |||||||| || ||||| || Sbjct 526 TCCAGAAGGAATCAACTCTCCATCTAGT 499 >seq4364 Length=12272 Score = 131 bits (144), Expect = 4e-25 Identities = 155/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 |||||||| ||||| || ||||| || ||||| || || |||||||| || || || Sbjct 3905 CAAATTTTTGTGAAGACCCTCACCGGTAAAACAATTACTCTCGAGGTTGA--GCCGAGTG 3848 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || | || ||||| || ||| |||||||||||||| || || ||||| || || || | Sbjct 3847 ACTCGATAGAGAATGTGAAAGCGAAGATTCAGGACAAGGAGGGCATCCCCCCAGATCAAC 3788 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 ||||||| || ||||| || || ||| | ||||| ||| | ||||| | || || || Sbjct 3787 AACGACTCATTTTCGCTGGCAAGCAGTTGGAAGACGGACGTACTCTATCTGACTACAATA 3728 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || ||||| || || ||||| || Sbjct 3727 TCCAGAAGGAATCTACTCTACATCTAGT 3700 Score = 102 bits (112), Expect = 2e-16 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 |||| || ||| |||||||||||||| || || ||||| || || || |||||||| | Sbjct 3455 AGAATGTGAAAGCGAAGATTCAGGACAAGGAGGGCATCCCCCCAGATCAACAACGACTCA 3396 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 | ||||| || || ||||| ||||| ||| | |||||| || || || |||| || | Sbjct 3395 TTTTCGCTGGCAAGCAGCTGGAAGACGGACGTACTCTTAATGACTACAATATCCAGAAGG 3336 Query 178111 AATCAACACTGCATCTTGT 178129 ||||||| || ||||| || Sbjct 3335 AATCAACTCTCCATCTAGT 3317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203481165469128