Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq4364 116 3e-21 seq14526 111 1e-19 seq1635 82.4 7e-11 seq1486 82.4 7e-11 >seq4364 Length=12272 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||| ||||| || ||| ||||| || || || ||||| ||| Sbjct 7054 CCACCACGAAGGCGAAGCACAAGATGTAGGGTGGATTCCTTTTGGATATTGTAGTCCGAG 6995 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || || ||||||||||| || || || || ||||||||||| | |||| Sbjct 6994 AGGGTACGACCATCTTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCTGGGGGA 6935 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCAC 41814 | || ||||||| | ||| | || || | ||| | | || || || | ||| || Sbjct 6934 ATGCCTTCCTTGT-CTTGAATCTTAGCCTTAACATTCTCTATGGTATCACTGGGCTCGAC 6876 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || |||||||| || || ||||| || ||||||||||| Sbjct 6875 TTCAAGTGTAATGGTTTTACCAGTGAGAGTCTTCACAAAAATCTGCAT 6828 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| || || || || | ||| |||||| || ||||| ||||| || Sbjct 3910 CCACCACGGAGACGCAAAACAAGGTGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAA 3969 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || | ||||||||||| || ||||| | |||||||| | || Sbjct 3970 AGAGTGCGTCCATCTTCCAATTGCTTGCCGGCAAAAATCAGTCTTTGTTGGTCTGGTGGG 4029 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCAC 41814 | | |||||| | | ||| | || |||| || | | || || || | ||||| Sbjct 4030 ATTCCCTCCTTAT-CTTGAATCTTGGCTTTTACATTCTCAATTGTATCACTAGGTTCCAC 4088 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || | |||||| || || || || || || |||||||||||||||||||| Sbjct 4089 TTCGAGCGTTATAGTCTTCCCAGTAAGAGTTTTTACGAAAATCTGCATGTT 4139 Score = 86.0 bits (94), Expect = 6e-12 Identities = 109/149 (73%), Gaps = 1/149 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||| ||||| || || |||||||| || || ||||| Sbjct 3299 CCACCACGAAGACGAAGCACTAGATGGAGAGTTGATTCCTTCTGGATATTGTAGTCATTA 3358 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| || ||||||||||| ||||| || || || ||||| || | ||| Sbjct 3359 AGAGTACGTCCGTCTTCCAGCTGCTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGGGG 3418 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT 41784 | || |||||||||| ||| | || |||| Sbjct 3419 ATGCCCTCCTTGTCC-TGAATCTTCGCTT 3446 >seq14526 Length=1284 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||| ||||| || || |||||||| || || ||||| Sbjct 481 CCACCACGAAGACGAAGCACTAGATGGAGAGTTGATTCCTTCTGGATATTGTAGTCATTA 540 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| || ||||||||||| ||||| || || || ||||| || | ||| Sbjct 541 AGAGTACGTCCGTCTTCCAGCTGCTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGGGG 600 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGC-TTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| | || || |||| | | | ||| |||| ||| || Sbjct 601 ATGCCCTCCTTGTCC-TGAATCTTCGCTTTCACATTCTCTATCGAGTCACTCGGCTCAAC 659 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || |||||||| || || ||||| || ||||| ||||| Sbjct 660 CTCGAGAGTAATTGTTTTACCGGTGAGGGTCTTCACAAAAATTTGCAT 707 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| || || || || | ||| |||||| || ||||| ||||| || Sbjct 709 CCACCACGGAGACGCAAAACAAGGTGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAA 768 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || | ||||||||||| || ||||| | |||||||| | || Sbjct 769 AGAGTGCGTCCATCTTCCAATTGCTTGCCGGCAAAAATCAGTCTTTGTTGGTCTGGTGGG 828 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCAC 41814 | | |||||| | | ||| | || |||| || | | || || || | ||||| Sbjct 829 ATTCCCTCCTTAT-CTTGAATCTTGGCTTTTACATTCTCAATCGTATCACTAGGTTCCAC 887 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | ||||| || || || || || |||||||||||||||||||| Sbjct 888 TTCAAGTGTTATAGTCTTCCCAGTAAGAGTCTTTACGAAAATCTGCAT 935 >seq1635 Length=24574 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||| ||||| || || |||||||| || || ||||| Sbjct 16522 CCACCACGAAGACGAAGCACTAGATGTAGAGTTGATTCCTTCTGGATATTGTAGTCATTA 16463 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| || ||||||||||| ||||| || || || ||||| || | ||| Sbjct 16462 AGAGTACGTCCGTCTTCCAGCTGCTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGGGG 16403 Query 41756 ACGCTCTCCTTGTCC 41770 | || |||||||||| Sbjct 16402 ATGCCCTCCTTGTCC 16388 >seq1486 Length=25894 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/152 (73%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||||||||||| ||| || || |||||||| ||||| ||||| || Sbjct 18511 CCACCACGAAGACGTAACACCAAATGAAGGGTAGATTCCTTCTGGATGTTGTAGTCCGAT 18452 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || ||||| ||||| || || |||| || ||||| || | ||| Sbjct 18451 AGAGTACGGCCATCTTCTAGCTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAGGA 18392 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCA 41786 | | ||||| ||| ||| |||| | ||||| Sbjct 18391 ATACCTTCCTTATCC-TGAATTTTGGCCTTCA 18361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462210314094400