Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrostomum_20lignano_20[genbank_20GCA_5F001188465.1_202015-07-29] 49,174 sequences; 1,040,124,789 total letters Query= AC_000014.1 Length=43804 Score E Sequences producing significant alignments: (Bits) Value seq16107 91.5 4e-14 seq38514 87.8 5e-13 seq10795 87.8 5e-13 seq4360 86.0 2e-12 >seq16107 Length=8295 Score = 91.5 bits (100), Expect = 4e-14 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 1002 TTCCGCCCGGCTGTTACGGTCGGATTGCTCCTCGCTCGGGCTTGGCCGCCAAATTTTTCA 1061 ||||||||||||| ||||| ||| | || || || || ||| |||||||||| |||| Sbjct 2033 TTCCGCCCGGCTGCTACGGCCGGGTGGCGCCCCGGTCAGGCCTGGCCGCCAAGCACTTCA 1974 Query 1062 TTGACGTCGGAGCGGGTGTTATCGATCCCGATTACCGCGGGAACGTTAGCGTGGTTTTGT 1121 | ||||| || || || ||| |||| || || || || || ||||| |||| || ||| Sbjct 1973 TCGACGTTGGCGCCGGGGTTGTCGACCCGGACTATCGGGGCAACGTCGGCGTTGTGCTGT 1914 Query 1122 TCAAT 1126 ||||| Sbjct 1913 TCAAT 1909 >seq38514 Length=13946 Score = 87.8 bits (96), Expect = 5e-13 Identities = 95/125 (76%), Gaps = 1/125 (1%) Strand=Plus/Minus Query 1002 TTCCGCCCGGCTGTTACGGTCGGATTGCTCCTCGCTCGGGCTTGGCCGCCAAATTTTTCA 1061 ||||||||||||| ||||| ||| | || || || || ||| |||||||||| |||| Sbjct 11524 TTCCGCCCGGCTGCTACGGCCGGGTGGCGCCCCGGTCAGGCCTGGCCGCCAAGCACTTCA 11465 Query 1062 TTGACGTCGGAGCGGGTGTTATCGATCCCGATTACCGCGGGAACGTTAGCGTGGTTTTGT 1121 | ||||| || |||| ||| |||| || || || || || ||||| |||| || ||| Sbjct 11464 TCGACGTTGGCGCGGCCGTTGTCGACCCGGACTATCG-GGCAACGTCGGCGTTGTGCTGT 11406 Query 1122 TCAAT 1126 ||||| Sbjct 11405 TCAAT 11401 >seq10795 Length=38037 Score = 87.8 bits (96), Expect = 5e-13 Identities = 95/125 (76%), Gaps = 1/125 (1%) Strand=Plus/Plus Query 1002 TTCCGCCCGGCTGTTACGGTCGGATTGCTCCTCGCTCGGGCTTGGCCGCCAAATTTTTCA 1061 ||||||||||||| ||||| ||| | || || || || ||| |||||||||| |||| Sbjct 10344 TTCCGCCCGGCTGCTACGGCCGGGTGGCGCC-CGGTCAGGCCTGGCCGCCAAGCACTTCA 10402 Query 1062 TTGACGTCGGAGCGGGTGTTATCGATCCCGATTACCGCGGGAACGTTAGCGTGGTTTTGT 1121 | ||||| || || || ||| |||| || || || || || ||||| |||| || ||| Sbjct 10403 TCGACGTTGGGGCCGGGGTTGTCGACCCGGACTATCGGGGCAACGTCGGCGTTGTGCTGT 10462 Query 1122 TCAAT 1126 ||||| Sbjct 10463 TCAAT 10467 >seq4360 Length=131182 Score = 86.0 bits (94), Expect = 2e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 977 GTTCCCACAGATTTAGTTTTTCAATTTCCGCCCGGCTGTTACGGTCGGATTGCTCCTCGC 1036 || ||||||||||| | | | ||||||||||||| ||||| ||| | || || || Sbjct 99319 GTGCCCACAGATTTGGCTGTGGCCATTCCGCCCGGCTGCTACGGCCGGGTGGCGCCCCGG 99378 Query 1037 TCGGGCTTGGCCGCCAAATTTTTCATTGACGTCGGAGCGGGTGTTATCGATCCCGATTAC 1096 || ||| |||||||||| ||||| ||||| || || || ||| |||| || || || Sbjct 99379 TCAGGCCTGGCCGCCAAGCACTTCATCGACGTTGGCGCCGGGGTTGTCGACCCGGACTAT 99438 Query 1097 CGCGGGAACGTTAGCGTGGTTTTGTTCAAT 1126 || || | ||| | || || |||||||| Sbjct 99439 CGGGGCAGCGTCGGTGTTGTGCTGTTCAAT 99468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139969418327208