Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrostomum_20lignano_20[genbank_20GCA_5F001188465.1_202015-07-29] 49,174 sequences; 1,040,124,789 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq2674 95.1 1e-14 seq857 95.1 1e-14 seq46426 93.3 4e-14 >seq2674 Length=67143 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 119014 CCCACGTATCCGTTGGGATCTGTTCCGTCTAACTCGTACTTATCGTTTAAGTAGATACAG 119073 || ||||| || || |||||| || || || | |||||| || || ||||||||| | Sbjct 63895 CCAACGTAGCCATTAGGATCTCGGCCATCCAAATTGTACTTGTCATTCAAGTAGATAGAA 63836 Query 119074 ACGCTTAACGCACTTTCCGGAGTCTTACTCCATTCCAGTAtttttttAGCCCAGTACATA 119133 | | ||| | || | || |||| ||||| || || || ||||||||||| Sbjct 63835 ATAGACAGCGCCTCGGCGGGCGACTCCGTCCACTCCAGAATCTTCTTGGCCCAGTACATG 63776 Query 119134 CGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTGAAGTTGTGCGGTGTTCCATAGA 119193 || || || ||||||||||| ||||| || |||||| || || |||| |||||| || Sbjct 63775 CGCAAGTAGCCGTGCATTTTGGCCTCGCGAACCATCTGCAGCTGGGCGGCGTTCCACAGC 63716 Query 119194 GGATCGTGTGTACGG 119208 | ||||| || ||| Sbjct 63715 CGGTCGTGAGTCCGG 63701 >seq857 Length=202914 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 119014 CCCACGTATCCGTTGGGATCTGTTCCGTCTAACTCGTACTTATCGTTTAAGTAGATACAG 119073 || ||||| || || |||||| || || || | |||||| || || ||||||||| | Sbjct 74257 CCAACGTAGCCATTAGGATCTCGGCCATCCAAATTGTACTTGTCATTCAAGTAGATAGAA 74316 Query 119074 ACGCTTAACGCACTTTCCGGAGTCTTACTCCATTCCAGTAtttttttAGCCCAGTACATA 119133 | | ||| | || | || |||| ||||| || || || ||||||||||| Sbjct 74317 ATAGACAGCGCCTCGGCGGGCGACTCCGTCCACTCCAGAATCTTCTTGGCCCAGTACATG 74376 Query 119134 CGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTGAAGTTGTGCGGTGTTCCATAGA 119193 || || || ||||||||||| ||||| || |||||| || || |||| |||||| || Sbjct 74377 CGCAAGTAGCCGTGCATTTTGGCCTCGCGAACCATCTGCAGCTGGGCGGCGTTCCACAGC 74436 Query 119194 GGATCGTGTGTACGG 119208 | ||||| || ||| Sbjct 74437 CGGTCGTGAGTCCGG 74451 >seq46426 Length=159343 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 119014 CCCACGTATCCGTTGGGATCTGTTCCGTCTAACTCGTACTTATCGTTTAAGTAGATACAG 119073 || ||||| || ||||||||| || || || | |||||| || || ||||||||| | Sbjct 28011 CCAACGTAGCCATTGGGATCTCGGCCATCCAAATTGTACTTGTCATTCAAGTAGATAGAA 28070 Query 119074 ACGCTTAACGCACTTTCCGGAGTCTTACTCCATTCCAGTAtttttttAGCCCAGTACATA 119133 | | ||| | || | || |||| ||||| || || || ||||||||||| Sbjct 28071 ATAGACAGCGCCTCGGCGGGCGACTCCGTCCACTCCAGAATCTTCTTGGCCCAGTACATG 28130 Query 119134 CGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTGAAGTTGTGCGGTGTTCCATAGA 119193 || || || ||||||||||| ||||| || |||||| || || || | |||||| || Sbjct 28131 CGCAAGTAGCCGTGCATTTTGGCCTCGCGAACCATCTGCAGCTGGGCAGCGTTCCACAGC 28190 Query 119194 GGATCGTGTGTACG 119207 | ||||| || || Sbjct 28191 CGGTCGTGAGTCCG 28204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511100046353680